Kribbella flavida: Kfla_6142
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Entry
Kfla_6142 CDS
T01155
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kfl
Kribbella flavida
Pathway
kfl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kfl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Kfla_6142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kfl03021
]
Kfla_6142
03400 DNA repair and recombination proteins [BR:
kfl03400
]
Kfla_6142
Enzymes [BR:
kfl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Kfla_6142
Transcription machinery [BR:
kfl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Kfla_6142
DNA repair and recombination proteins [BR:
kfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Kfla_6142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
HK97-gp10_like
Motif
Other DBs
NCBI-ProteinID:
ADB35145
UniProt:
D2PU94
LinkDB
All DBs
Position
complement(6579791..6583651)
Genome browser
AA seq
1286 aa
AA seq
DB search
MLDVNFFDELRIGLATADEIRQWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRQKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITDVDEEARHRDLASLEGRTDVERKQLENRRDNDIETRMKKLEED
LAQLEAEGAKADVRRKVKEGAEREVKQLRDRAQREIDRLDEVWTRFKNLKVQDLEGDEIL
YRAMKERFGKYFEGAMGAAAIQRRLETFDLKAEAANLRETIKTGKGQRKTRALKRLKVVT
AFLATNNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
AQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCSAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPADGRPVTMPTQDMIIGIYFLTMLKEGVKGEGR
AFSSVAEALMAFDRGELSLQAKITLRLDEAAAPEHALELADGGFSLETTLGRALFNEALP
SDYTFVDAEVGKKQLGSIVNDLAERYSKVQVANCLDALKDLGFRWATRSGVTVSIDDFST
PPSKPEIMARYESQAEKVQKQFERGLITSSERRQELIEIWTGANAEVGKAMEENFEKANP
IWMMVHSGARGNMMQIRQIAGMRGLVANPKGEIIARPIKSNFREGLSVVEYFIATHGARK
GLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLPKKIGEPGPDGRTVHAENVET
SAYARTLAQDVTGRDGTVVLTAGSDLGDVSIAALVEAGVEEVKVRSVLTCDAKTGTCAKC
YGRSLATGKPVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITHGLPRVVELFEA
RQPKGKAPISEAAGRIAIEDTDKTRKLVLTPDDGSEEVAYPVSKRGRLLIEDGQHVEVGQ
QLTQGTPDPQEVLRILGIRKAQEHLVDEVQEVYRSQGVAIHDKHIEIIVRQMLRRVTVIE
SGDAQLLPGELADRIMFEAENRRVVAEGGTPASGRPVLMGITKASLATESWLSAASFQET
TRVLTEAAIHGKSDSLVGLKENVIIGKLIPAGTGMDRYRNIRVEPTEEAKAAMYSMVGYE
SYDYDFGPSAGQSVPLDDFDLGSYKN
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtgaacttcttcgacgagcttcggatcggcctggcgactgcggacgaaatc
cgccagtggtcgcacggcgaggtcaagaagcccgagacgatcaactaccggacgctcaag
ccggagcgtgacggtctgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgcgagcggtgtggcgtc
gaggtcacccggcagaaggtgcgccgcgagcggatgggccacatcgagctggccgcgccg
gtcacccacatctggtacttcaagggtgtcccgtcgcggctgggctacctgctcgacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcaccgacgtcgac
gaggaggcgcggcaccgcgacctcgcgtcgctggagggccggacggacgtcgagcgcaag
cagctcgagaaccggcgcgacaacgacatcgagacgcggatgaagaagctcgaggaggac
ctggcccagctcgaggccgagggcgccaaggccgatgtccgccgcaaggtcaaggaaggc
gccgagcgtgaggtcaagcagctgcgcgaccgcgcgcagcgcgagatcgaccgcctcgac
gaggtctggacccggttcaagaacctgaaggtccaggacctcgagggcgacgagatcctc
taccgcgccatgaaggagcggttcggcaagtacttcgagggcgcgatgggcgccgccgcg
atccagcgccggctggagaccttcgacctcaaggccgaggccgccaacctgcgcgagacg
atcaagaccggcaagggccagcgcaagacccgcgccctgaagcggctcaaggtcgtcacc
gcgttcctggcgacgaacaacagcccgatgggcatggtgctcgactgcgtcccggtgatc
ccgccggacctgcggccgatggtccagctcgacggtggccggttcgccacctcggacctg
aacgacctgtaccgccgggtgatcaaccggaacaaccggctcaagcgactgctcgacctg
ggcgcgccggaaatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtccggtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgccgaaggcgatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtggacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtcagcgc
gcccaggtctgggacgtgctggaagaggtcatcaccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccggctcggcatccaggcgttcgagccgcagctgatcgagggcaag
gcgatccagatccacccgctcgtctgctccgcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcccaggccgaggcgcggatcctgatgctg
tcgacgaacaacatcctgaagccggccgacggccgtccggtcacgatgccgacccaggac
atgatcatcggcatctacttcctgaccatgctgaaggaaggcgtcaagggcgagggccgg
gcgttcagctcggtcgccgaggcgctgatggccttcgaccgcggcgagctgtcgctgcag
gcgaagatcacgctgcgcctcgacgaggcggccgcgccggagcacgcgctggaactggcc
gacggcggcttctcgctggagacgacgctgggtcgcgccctgttcaacgaggcgctgccg
agcgactacaccttcgtggacgccgaggtcggcaagaagcagctgggctcgatcgtcaac
gacctggccgagcgctactccaaggtccaggtggcgaactgcctggacgcgctgaaggac
ctcggtttccgctgggccacccggtccggtgtgaccgtgtcgatcgacgacttcagcacg
ccgccgagcaagcccgagatcatggcgcgctacgagtcgcaggccgagaaggtccagaag
cagttcgagcggggtctgatcacctcgtccgagcggcgccaggagctgatcgagatctgg
accggagccaacgccgaggtcggcaaggcgatggaggagaacttcgagaaggccaacccg
atctggatgatggtccactcgggtgcccgaggcaacatgatgcagatccggcagatcgcc
ggtatgcgtggcctggtggccaacccgaagggcgagatcatcgcccggccgatcaagtcc
aacttccgcgagggcctgtcggtggtcgagtacttcatcgccacccacggtgcgcggaag
ggcctggccgacaccgcgctgcggaccgccgactcggggtacctgacccgtcgtctggtg
gacgtctcgcaggacgtgatcatccgcgaggaggactgcggcaccgagcggggcctgccg
aagaagatcggcgagcccggtccggacggccgtaccgtgcacgccgagaacgtcgagacc
agcgcctacgcccgcacactggcgcaggacgtcaccggtcgcgacgggaccgtcgtactg
accgcgggcagcgacctgggcgacgtgtccatcgccgccctggtcgaggccggggtcgag
gaggtcaaggtccgctccgtgctgacctgtgacgccaagaccgggacctgcgcgaagtgc
tacggccgttcgctggcgaccggcaagccggtcgacatcggtgaggccgtcggcatcatc
gcggcccagtccatcggtgagcccggtacgcagctgacgatgcggaccttccacaccggt
ggtgtcgcgggtgatgacatcacccacggtctgccgcgtgtggtcgagctcttcgaggcc
cgccagcccaagggcaaggcgccgatctcggaggccgccggccggatcgcgatcgaggac
accgacaagacccgcaagctggtgctcaccccggacgacggttccgaggaggtcgcctac
ccggtgtcgaagcgtggccggctgctgatcgaggacggtcagcacgtcgaggtcggtcag
cagctgacgcagggtacgccggacccgcaggaggttctgcggatcctgggcatccgcaag
gcgcaggagcacctggtggacgaggtccaggaggtgtaccggtcgcagggtgtggccatt
cacgacaagcacatcgagatcatcgtccggcagatgctgcgccgggtcacggtgatcgag
tcgggcgacgcccagctgctgccgggtgagctcgcggaccggatcatgttcgaggcggag
aaccgccgcgtggtcgccgagggcggtacgccggcctcgggtcgtccggtgctgatgggt
atcaccaaggcgtcgctcgcgaccgagtcgtggctgtcggccgcctccttccaggagacg
acccgcgtgctcaccgaggccgcgatccacggcaagtccgactcgctggtcggtctgaag
gagaacgtcatcatcggaaagctgatcccggcgggtaccggcatggaccgttaccgcaac
atccgggtggagcccaccgaggaggcgaaggccgcgatgtactcgatggtcggctacgag
tcgtacgactacgacttcggcccgtccgccgggcagtcggtcccgctcgacgacttcgac
ctcggttcctacaagaactga
DBGET
integrated database retrieval system
