Kocuria flava: AS188_06195
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Entry
AS188_06195 CDS
T04206
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kfv
Kocuria flava
Pathway
kfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS188_06195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kfv03019
]
AS188_06195
03400 DNA repair and recombination proteins [BR:
kfv03400
]
AS188_06195
Enzymes [BR:
kfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AS188_06195
Messenger RNA biogenesis [BR:
kfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AS188_06195
DNA repair and recombination proteins [BR:
kfv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AS188_06195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
MGS
Pribosyltran
HEM4
Motif
Other DBs
NCBI-ProteinID:
ALU39409
UniProt:
A0A0U2YV36
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All DBs
Position
1365722..1367911
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AA seq
729 aa
AA seq
DB search
MTSSSSPTTLPAVPATPDPRLHEDALELLRALTGRDDAAFHPGQFEAVEALVGHGRRALV
VQRTGWGKSAVYFLSALLLRARGRGPTLIVSPLLALMRDQVAAAERAGVRAAAINSANAT
EWGEIAARLEADELDVLLVSPERLNNPVFREQQLPRLVARLGLLVVDEAHCISDWGHDFR
PDYRRIRDLIARLPARVPVLATTATANERVVADVEEQLGVRLDGSGTGEVFTLRGPLSRA
SLRLGVLRLPTATARLGWLLEHLGSLPGSGIVYTLTISAAEDTAQALAAAGIPVRAYTGR
TDQAEREELEAALKNNEVKALVATSALGMGFDKPDLGFVVHLGAPSSPVAYYQQVGRAGR
ATDSADVLLLPGAEDRQIWEYFATASMPTEHKAEAVLAELGAAGGPLSVAVLESRVDLRR
SPLELLLKVLAVEGAVERVQGGWQATGAPWRYDAERYGRIGAARTAEQDAMLEYETTDRC
RMQFLARQLDDTTAEPCGRCDTCAGAWYPTAVDETATRSAGAALTRVGTVVEPRAQWPTG
MPRLGVEVKGRIPEGERAEEGRALARLTDLGWGNRLRELFRPGGEGAVADGPVDQALGRA
CVQVLAEWQWPARPAAVVSVPSRSRPQLVRSLAEGMAAVGHLPYLGALEVPEGHPSGGHG
GNSAYRLAAVWEKFRVPPELAAALEELRGAPVLLVDDLVDSRWTLAVAARELRRAGAGPV
LPFVLAAQG
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgacgagctcctcctccccgaccacgctcccggccgtccccgcgaccccggacccgcgc
ctgcacgaggacgcgctggagctgctgcgcgccctcaccggccgggacgacgccgcgttc
caccccggccagttcgaggccgtcgaggccctggtcggccacgggcgccgcgccctggtg
gtccagcgcaccgggtggggcaagtccgccgtctacttcctctccgcgctgctgctgcgc
gcccggggccgcgggccgacgctcatcgtctccccgctgctggcgctgatgcgcgaccag
gtcgccgcggccgagcgcgcgggcgtgcgggcggccgccatcaactccgccaacgccacc
gagtggggcgagatcgccgcacggctggaggccgacgagctcgacgtcctgctcgtctcc
ccggaacggctcaacaacccggtcttccgcgagcagcagctgccgcggctcgtcgcccgc
ctcgggctgctcgtggtcgacgaggcccactgcatctccgactggggccacgacttccgt
cccgactaccgccgcatccgcgacctcatcgcccgcctgcccgcccgggtgcccgtgctg
gccaccacggccaccgccaacgagcgcgtcgtggccgacgtcgaggagcagctgggggtg
cgcctggacggcagcggcacgggcgaggtcttcaccctgcgcggcccgctctcgcgcgcc
tccctgcgcctgggggtgctgcgcctgccgaccgccaccgcccggctcggctggctgctc
gagcacctcgggtccctgcccggcagcgggatcgtctacaccctgaccatcagcgccgcc
gaggacaccgcccaggcgctggccgcggccgggatccccgtgcgggcctacaccgggcgc
accgaccaggccgagcgcgaggagctcgaggcggccctgaagaacaacgaggtcaaggcc
ctggtcgcgacctccgcgctgggcatgggcttcgacaagcccgacctcggcttcgtggtg
cacctgggggcgccctcctcgcccgtggcctactaccagcaggtgggccgcgccgggcgc
gccaccgacagcgccgacgtcctgctcctgcccggggccgaggaccgccagatctgggag
tacttcgcgaccgcgtccatgcccaccgagcacaaggccgaggccgtgctggccgagctg
ggcgccgccggcgggccgctgtccgtggccgtgctcgagtcgcgggtcgacctgcgccgc
agccccctcgagctgctgctgaaggtcctcgccgtggagggcgccgtggagcgggtccag
ggcgggtggcaggccaccggcgcgccctggcgctacgacgccgagcgctacgggcggatc
ggcgccgcccgcaccgccgagcaggacgcgatgctcgagtacgagaccaccgaccggtgc
cgcatgcagttcctcgcccgccagctcgacgacaccaccgccgagccctgcgggcgctgc
gacacctgcgccggcgcctggtaccccaccgccgtggacgagaccgcgacccgctcggcc
ggggccgccctcacccgcgtgggcacggtcgtggagccccgcgcccagtggccgaccggg
atgccccggctcggggtcgaggtcaagggccggatccccgagggcgagcgcgccgaggag
ggccgggccctcgcccgcctgaccgacctcgggtggggcaaccggctgcgggagctcttc
cgccccgggggagagggcgcggtcgccgacggccccgtggaccaggccctgggccgcgcc
tgcgtgcaggtgctcgccgagtggcagtggccggcccggcccgccgccgtcgtctccgtc
ccgtcccggtcgcggccgcagctggtgcgctccctcgccgagggcatggccgccgtcggg
cacctgccctacctcggtgcgctcgaggtcccggagggccacccctcgggcgggcacggc
ggcaacagcgcctaccggctcgcggccgtgtgggagaagttccgggtgcccccggagctg
gccgccgccctcgaggagctgcggggtgcacccgtgctgctcgtcgacgacctcgtcgac
agccgctggaccctggccgtcgccgcccgggagctgcgccgggccggggccgggccggtg
ctgcccttcgtgctcgccgcccagggctga
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