Kocuria flava: AS188_07735
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Entry
AS188_07735 CDS
T04206
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kfv
Kocuria flava
Pathway
kfv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AS188_07735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kfv03400
]
AS188_07735
Enzymes [BR:
kfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AS188_07735
DNA repair and recombination proteins [BR:
kfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AS188_07735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
DUF3638
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALU39660
UniProt:
A0A0U3I8H2
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All DBs
Position
1727871..1731584
Genome browser
AA seq
1237 aa
AA seq
DB search
MTLSGLLDALSAERSFANIRTQAALPPGERSPETVISAPDGMRAVLTAQIRRALDDAPAP
AEGQSPPVVLAVTATGRESEDLAAALAAYLPQQEVAEFPAWETLPHERLSPRSDTVGRRL
EVLRRLAHPDAGGPLRVLTAPVRSVLQPVVEGLGDMAPVRFVRGEELDFDDAVAALARAA
YARVDMVTRRGEFAVRGGIIDVFSPVADHPVRIEFFGDEVEELRWFAVADQRTLATGDHP
DSLTAPPCREVLITPSVMSRAATLRDRLPGAESMLERIAGGIYVEGMESLAPLLVDGMVP
VLQLLPPGSIVVVVEPEKVRARAHDLVATNEEFLLAAWDSASDGTSAPLDLTSAQAAGDD
GGRTLAAGSFQTLGEARATALGHGTAWWSLTALNLALASAADVDADTSDEAVALLDSEAD
SLTVAAREPHGFAGDVEAMLEFLGKRVADGWRVVAVTEGPGPLARIAELLHEAGVPAARR
DSLDEAPQPGIVELTTAVAGKGFALDALELALLTEADLLGKASPYTTKDMRKLPVRRKRN
AVDPLALSQGDFVVHEQHGIGQFVELTQRPIAGAVTKPGQPKPVREYLVLEYAPSKRNGP
RDRLFVPTDQLDQVTTYVGGETPALSKMGGADWNKTKRAAKKAVKDIANELIRLYSARMA
SRGHAFDPDTPWQRELEEAFPYIETPDQLTTINEVKADMEREIPMDRLISGDVGYGKTEV
AVRAAFKAVQDGKQVAVLVPTTLLAQQHTETFTERFSGFPVRLATLSRFQTAKETKATLA
GLEDGSIDVVIGTHRLLSKEVVFKDLGLVVIDEEQRFGVEHKEKLKAMRTNVDVLAMSAT
PIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGAYTDKQVSAAVRRELMREGQVFYIHN
RVSSIERKAKEIAELVPEARIAVAHGQMSESRLEQIIVDFWEKKFDVLICTTIVETGLDI
ANANTLIVDGADRYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLSETALERLKAVAAHN
ELGAGMQLAMKDLEIRGAGNLLGGEQSGHIAGVGFDMYLRLVGEAVAEYRGEEDERPAEM
KIELPVNAYLPHDYVPGERLRLEAYRNLANAATDEAIQEVADELADRYGELPEPVQNLLE
VARFRVVARAAGLTDVGAMGNTIRFAPADLPESRRMRLTRLYPGAQVKTVPGTETAQVLV
PKPKTARIGGKDLVDREILEWARGVVEAVFAKEPAAA
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgtccggactgctcgacgccctctccgcggagcgctccttcgcgaacatccgc
acccaggccgccctcccgcccggcgagcgcagccccgagacggtcatcagcgccccggac
gggatgcgcgcggtgctcaccgcgcagatccgccgcgcgctcgacgacgcccccgccccg
gccgagggccagtccccgccggtggtgctggccgtgaccgccacgggccgggagtccgag
gacctcgccgccgcgctggccgcctacctcccgcagcaggaggtcgccgagttcccggcc
tgggagacgctgccgcacgagcggctctccccgcgctcggacaccgtgggccggcgcctc
gaggtgctgcgccgtctggcccacccggacgccggcggcccgctgcgggtgctcaccgcc
ccggtgcgctccgtgctgcagccggtggtcgagggcctgggggacatggcgcccgtgcgg
ttcgtgcgcggggaggagctcgacttcgacgacgccgtggccgccctcgcccgggccgcc
tacgcccgggtggacatggtgacccgccgcggggagttcgccgtgcgcggcggcatcatc
gacgtcttctccccggtggccgaccaccccgtgcgcatcgagttcttcggcgacgaggtc
gaggagctgcgctggttcgccgtggccgaccagcgcaccctggccaccggcgaccacccc
gactccctcaccgccccgccgtgccgcgaggtgctcatcaccccctcggtgatgtcgcgc
gcggcgacgctgcgggacaggctgcccggggccgagtcgatgctcgagcggatcgccggc
gggatctacgtggagggcatggagtcgctggccccgctgctcgtcgacggcatggtcccg
gtgctgcagctgctgccgccgggctcgatcgtcgtcgtcgtggagcccgagaaggtgcgg
gcgcgcgcccacgacctcgtggccaccaacgaggagttcctcctcgccgcctgggactcc
gcctcggacgggacgtccgcgcccctcgacctcacctccgcgcaggccgcgggcgacgac
gggggccgcaccctggccgccggctccttccagaccctcggcgaggcgcgggccaccgcg
ctcgggcacggcacggcgtggtggtcgctcaccgcgctgaacctcgccctggcctcggcc
gccgacgtcgacgccgacacctccgacgaggccgtggccctgctcgactccgaggccgac
tccctgaccgtcgccgcccgcgagccccacggcttcgccggggacgtcgaggcgatgctc
gagttcctcggcaagcgcgtggccgacggctggcgcgtcgtcgccgtgaccgagggcccc
ggcccgctcgcgcgcatcgccgagctgctgcacgaggccggggtgcccgccgcccgcagg
gactccctcgacgaggccccgcagcccggcatcgtggagctgaccaccgcggtggccggg
aagggcttcgccctcgacgccctcgagctggccctcctcaccgaggccgacctgctcggg
aaggccagcccctacacgaccaaggacatgcgcaagctgcccgtgcggcgcaagcgcaac
gccgtggacccgctcgcgctctcccagggcgacttcgtggtccacgagcagcacggcatc
gggcagttcgtggagctcacccagcgacccatcgccggtgccgtcaccaagccaggccag
cccaagccggtgcgcgagtacctcgtgctcgagtacgccccgtccaagcgcaacggcccc
cgcgaccgcctgttcgtgcccaccgaccagctcgaccaggtcaccacctacgtgggcggg
gagaccccggcgctgtccaagatgggcggggccgactggaacaagaccaagcgcgccgcg
aagaaggccgtcaaggacatcgccaacgagctcatccggctctactccgcccggatggcc
tcccgcggccacgccttcgaccccgacaccccgtggcagcgggagctggaagaggccttc
ccgtacatcgagacccccgaccagctgaccaccatcaacgaggtcaaggccgacatggag
cgggagatccccatggaccggctgatctccggggacgtgggctacggcaagaccgaggtc
gccgtgcgcgcggcgttcaaggccgtccaggacggcaagcaggtcgcggtgctcgtgccc
acgaccctgctcgcccagcagcacaccgagaccttcaccgagcgcttctccggcttcccc
gtgcgcctggccaccctctcccgcttccagaccgccaaggagacgaaggcgacgctggcc
gggctcgaggacgggtcgatcgacgtggtcatcggcacccaccggctgctgtcgaaggag
gtcgtcttcaaggacctcgggctcgtggtcatcgacgaggagcagcgcttcggcgtcgag
cacaaggagaagctcaaggcgatgcgcaccaacgtggacgtcctggcgatgtccgcgacc
cccatcccgcgcaccctggagatgtcgctgaccggcatccgcgagacctcgaccctggcc
accccgcccgaggagcgccacccggtgctcacctacgtgggcgcctacaccgacaagcag
gtctcggccgccgtgcgccgggagctcatgcgcgagggccaggtcttctacatccacaac
cgggtctcctcgatcgagcgcaaggccaaggagatcgccgagctcgtgcccgaggcccgc
atcgccgtggcccacgggcagatgtccgagtcccggctcgagcagatcatcgtggacttc
tgggagaagaagttcgacgtcctcatctgcacgaccatcgtggagaccggtctggacatc
gccaacgccaacaccctcatcgtcgacggcgccgaccgctacgggctctcccagctgcac
cagctgcgcgggcgcgtgggccgcggccgcgagcgggcctacgcctacttcctctacccg
gccgagaagccgctgtccgagaccgccctggagcggctcaaggccgtggccgcccacaac
gagctcggcgccggcatgcagctggccatgaaggacctcgagatccgcggtgccggcaac
ctgctgggcggagagcagtccgggcacatcgccggggtcggtttcgacatgtacctgcgc
ctggtcggggaggccgtggcagagtaccgcggcgaggaggacgagcggcccgccgagatg
aagatcgagctgcccgtcaacgcctacctgccccacgactacgtgccgggggagcggctg
cgcctggaggcctaccgcaacctcgccaacgccgccacggacgaggcgatccaggaggtc
gccgacgagctcgccgaccgctacggcgagctgcccgagcccgtgcagaacctgctcgag
gtcgcccgcttccgcgtggtcgcccgcgccgccgggctcaccgacgtcggggcgatgggg
aacacgatccgcttcgcccccgcggacctgcccgagtcgcggcggatgcgcctgacccgc
ctctacccgggagcccaggtcaagaccgtgcccggcaccgagaccgcccaggtgctcgtc
cccaagcccaagaccgcccggatcgggggcaaggacctggtggaccgggagatcctcgag
tgggcccgcggcgtggtcgaggcggtcttcgcgaaggagccggcggcggcctga
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