Kocuria flava: AS188_11915
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Entry
AS188_11915 CDS
T04206
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kfv
Kocuria flava
Pathway
kfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS188_11915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kfv03019
]
AS188_11915
03009 Ribosome biogenesis [BR:
kfv03009
]
AS188_11915
Enzymes [BR:
kfv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AS188_11915
Messenger RNA biogenesis [BR:
kfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AS188_11915
Ribosome biogenesis [BR:
kfv03009
]
Prokaryotic type
rRNA processing factors
AS188_11915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ALU40345
UniProt:
A0A0U3HGQ0
LinkDB
All DBs
Position
complement(2671228..2674959)
Genome browser
AA seq
1243 aa
AA seq
DB search
MDAEQVNPAGAQDALEPGQQHAHNEARGQQPPAGAQEAPATGPGEEEAPATGAAETPAAG
SPGQEAPAAEPVGQDAPAIGAAENPAAGSPAQEAPVAGPAAHEDPANGAAAAPDTGTAGH
GGAAVEAAGAGPATETAATGAEPVAAGAEAAAAQAAAAPAAQEPDAQEPDAPAPQGTGAA
RTETDVLDVAPGTALPGEPEPLAAAQEEAAPEHPAPGTPGAEEAAEDLEPAGQAADEGPR
STPGDRQPDAPERSGTGPQDAEPDAEQEPGTTDAPHRDADGTAAQRPDTDRHAAQPADAD
GTAAQRPVPEQEPGAPEPEQDEDPLTALSSAVTATSIMFHAPDLDQIRQAAEARAARRRE
ARRHREEEASFEDQGDGVDAETAEAEDEGGEQPDGPVTSRRRRRRRRGDVDMELVGGSDD
DPPNTVTRVRAPRGAEPAGPDQVVAVKGSTRLEAKKQRRRESRQTGRRRQVITEAEFLAR
RESVERQMLVRQKDNRIQIGVLEDGVLAEHFVSHTQQDSLIGNVYVGKVQNVLPSMEAAF
IDIGRGRNAVLYAGEVNWDASRLEGGPRRIENALKSGDSVLVQVTKDPVGHKGARLTSQI
SLPGRYLVYVPGGSMTGISRKLPDVERNRLKKILKDRLPDGAGVIVRTAAEGASEEELTH
DINRLRAQWEQIQERAGSSKTLAPEMLYAEPDLTIKTVRDVFNEDFTTMVVQGEEAWDNI
EAYVTYVAPDLLDRLKRWDEDEDLFVHYRVEEQIQKALDRKVYLPSGGSLVIDRTEAMTV
VDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVL
RRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFSEPCEHCAGRGVVVHDHPLE
GRAGGSGSESREQRPNRTERKRSRRGGAEQPPRAEARPAEADPAEKAKAEAARTAFATIA
AATHHEVPAETAAEDAAAGTAPAAEGARGEEGEGRSEGSGRSRKKRRGKRSRNRGQGGES
AQRPEPGDREEPRGEDRGGERAGDRGEDRGQDRGAAPEQQDGAASRLTIKGEVIELPQGH
AAAGEQPGRPAEGARLTLDSLADAFGAPADAQAETPARRAPEPEPAPRQERAPRQERAPR
EKPARRAEQPRQAEQPRQEEPARPEEPARPRRRSRRASAPAGRAGEATVTAEEAAAAEGA
RHVAKLPARPAGQERPQGSGAPTIVGVGVKAEDLTSGRPAGEG
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgaacaggtgaacccggccggggcccaggacgccctggaacccggtcagcag
cacgcacacaacgaggcccgcggccagcagccgcccgccggcgcacaggaggccccggcc
accggtcccggtgaggaggaggcccccgcgaccggagcggccgagacccccgcggcggga
agccccgggcaggaggcccccgcggccgagcccgtcgggcaggacgcccccgcgatcgga
gcggccgagaaccccgcggcgggaagccccgcgcaggaggcccccgtagccgggcccgcg
gcgcacgaggacccggcgaacggcgccgccgcagctccggacaccggcaccgccggtcac
gggggtgcggccgtggaggccgccggagcggggcccgccacggagaccgccgcgaccggc
gcggagcccgtagcggccggcgccgaggccgcagcggcgcaggccgccgcggccccggcc
gcgcaggagccggacgcacaggagccggacgccccggcaccgcaggggaccggcgcggcg
cggaccgagaccgacgtcctcgacgtcgcccccggcacggccctgccgggcgagcccgaa
ccgctggccgccgcgcaggaggaggccgcgcccgagcacccggcgccgggcacgcccggg
gccgaggaggcggcggaggacctcgagcccgcaggccaggcagccgacgagggtccgcgc
agcacccccggtgaccgtcagccggacgccccggagcggagcggcaccggaccgcaggac
gcggaaccggacgccgagcaggagcccgggacgacggatgccccgcaccgggacgccgac
gggacggctgcgcagcggccggacaccgaccggcacgccgcgcagcccgcggacgccgac
gggaccgccgcgcagcggccggtcccggagcaggagcccggggcgccggagcccgagcag
gacgaggatcccctgaccgccctgagctcggccgtcacggccacctcgatcatgttccac
gccccggacctggaccagatccggcaggcggcggaggcccgggcggcccgccgccgggag
gcccgccgccaccgcgaggaggaggcctcgttcgaggaccagggcgacggcgtggacgcc
gagaccgccgaggccgaggacgagggcggggagcagcccgacggacccgtcacgagccgg
cggcggcgccggcgccgccgcggggacgtcgacatggagctcgtgggcggcagcgacgac
gacccgcccaacaccgtcacccgcgtgcgcgccccgcgcggcgcggaaccggccgggccc
gaccaggtcgtggccgtgaagggctccacccgcctcgaggccaagaagcagcgccgccgc
gagtcccgccagacgggccgccggcgccaggtgatcaccgaagccgagttcctcgcccgg
cgcgagtcggtcgagcggcagatgctcgtgcgccagaaggacaaccggatccagatcggc
gtgctcgaggacggggtgctcgccgagcacttcgtctcccacacgcagcaggactccctg
atcggcaacgtctacgtcggcaaggtccagaacgtgctgccctccatggaggccgcgttc
atcgacatcggacggggccgcaacgccgtgctctacgccggcgaggtcaactgggacgcg
tcgcgcctcgagggcggcccgcgccggatcgagaacgccctgaagtccggggactcggtg
ctcgtgcaggtcaccaaggacccggtcgggcacaagggcgcgcggctcacgagccagatc
tccctgcccgggcgctacctcgtctacgtgcccggcgggtcgatgaccggcatctcccgc
aagctgcccgacgtcgagcgcaaccggctgaagaagatcctcaaggaccggctgccggac
ggcgccggggtgatcgtgcgcaccgcggccgagggcgcctccgaggaggagctcacccac
gacatcaaccggctgcgggcgcagtgggagcagatccaggagcgggcgggctcctccaag
accctcgcccccgagatgctctacgcggagccggacctgaccatcaagaccgtccgggac
gtgttcaacgaggacttcacgacgatggtcgtccagggcgaggaggcctgggacaacatc
gaggcctacgtgacctacgtggccccggacctcctggaccggctcaagcgctgggacgag
gacgaggacctgttcgtgcactaccgggtggaggagcagatccagaaggcgctggaccgc
aaggtctacctcccctcgggcggctcgctcgtgatcgaccgcaccgaggcgatgaccgtc
gtcgacgtcaacacgggcaagttcaccggctccggcggcaacctcgaggagaccgtcacc
aagaacaacctcgaggcagccgaggagatcgtgcggcagctgcgcctgcgcgacatcggc
gggatcatcgtcatcgacttcatcgacatggtcctcgagtccaaccgcgacctcgtgctc
cggcgcctcgtcgagtgcctggggcgcgaccgcaccaagcaccaggtcgccgaggtcacc
tcgctgggcctcgtgcagatgacccgcaagcgcatgggcacgggcctgctcgaggtcttc
tcggagccgtgcgagcactgcgccggccgcggggtcgtcgtccacgaccacccgctcgag
ggccgcgccggcgggtccggctccgagtcccgcgagcagcgcccgaaccgcaccgagcgc
aagcgcagccgccgcggcggcgccgagcagccgccgcgggccgaggcccgcccggccgag
gcggatcccgcggagaaggcgaaggccgaggcggcccgcaccgcgttcgcgaccatcgcc
gccgccacccaccacgaggtgccggccgagaccgccgccgaggacgcggcggccggaacg
gctcccgcggcggagggggcccggggcgaggagggcgagggccgctcggaggggtccgga
cgctcccgcaagaagcggcgcggcaagcgcagccgcaaccggggccagggcggcgagtcc
gcgcagcggccggagcccggggaccgcgaggagccccgcggcgaggaccgtggcggcgag
cgcgccggggaccgtggcgaggaccgcggtcaggaccgcggggccgcgcccgagcagcag
gacggcgccgcgtcgcgcctgacgatcaagggcgaggtcatcgagctcccgcagggccac
gccgcggccggcgagcagcccgggcgccctgcggagggcgcccggctgacgctggactcc
ctggccgacgccttcggtgccccggcggacgcgcaggccgagaccccggcgcgccgtgcc
cccgagcccgagccggccccgcggcaggagcgcgccccgcggcaggagcgcgccccgcgg
gagaagcccgcccgccgggcggagcagccccgccaggcggagcagccgcggcaggaggag
ccggcccgcccggaggagcccgcacggccccgtcgtcgttcccgccgggccagcgccccg
gccggacgggcgggcgaggcgacggtcaccgccgaggaggccgcggccgccgagggcgcc
cgccacgtcgcgaagctgcccgcccggcccgccgggcaggagcgcccgcagggctccggt
gccccgaccatcgtgggcgtcggcgtcaaggccgaggacctcaccagcggccgtcccgcc
ggcgagggctga
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