Kocuria flava: AS188_12315
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Entry
AS188_12315 CDS
T04206
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
kfv
Kocuria flava
Pathway
kfv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
kfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AS188_12315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kfv03400
]
AS188_12315
Enzymes [BR:
kfv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AS188_12315
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AS188_12315
DNA repair and recombination proteins [BR:
kfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AS188_12315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
HPTransfase
HpcH_HpaI
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ALU40408
UniProt:
A0A0U3HHT4
LinkDB
All DBs
Position
complement(2760992..2761933)
Genome browser
AA seq
313 aa
AA seq
DB search
MPELPEVEVVRRGVARWVVGRTVEEAQVLDPRSVRRHEAGPAHFAHELSGAVVADAVRRG
KFLWLPLTGADGADPQEALLVHLGMSGQLLVQDAGRPDEKHLRVRLRLGPRPGVPDELRF
VDQRIFGGMVLDPLVPTADAAPGGLGATGLPLVPARAAHIGRDPLDPAFDADAVHARLRR
RRTGLKRALLDQSLVSGIGNIYADEALWRARLHWARPTDTLRRPETVRLLDAVRAVMEQA
LAAGGTSFDSLYVNVNGESGWFARSLDAYGRAGRACRRCAEEGRGTLIVREQFMNRSSYR
CPACQRTPRNARF
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgagctgcccgaggtcgaggtcgtccgccgcggggtggcccgctgggtcgtgggc
cgcacggtcgaggaggcccaggtgctggacccccgctcggtgcgccgccacgaggccggc
cccgcgcacttcgcccacgagctctccggcgcggtcgtggccgacgccgtgcgccgcggg
aagttcctctggctgcccctcacgggcgcggacggggcggacccgcaggaggcgctgctc
gtgcacctcgggatgagcgggcagctgctcgtccaggacgcgggccggcccgacgagaag
cacctgagggtgcgcctgcgcctcggaccccgccccggggtccccgacgagctgcgcttc
gtcgaccagcggatcttcgggggcatggtcctcgacccgctcgtgcccaccgccgacgcc
gcccccggcggcctcggggccaccgggctgccgctcgtgcccgcccgcgccgcccacatc
gggcgggaccccctggacccggccttcgacgccgacgccgtgcacgcgcgcctgcgccgc
cgccgcaccgggctcaagcgggccctgctggaccagtcgctggtctcggggatcggcaac
atctacgccgacgaggcgctgtggcgggcccgcctgcactgggcccggcccaccgacacg
ctccggcgcccggagaccgtccggctgctggacgcggtgcgcgcggtgatggagcaggcc
ctggccgccggcggcacgagcttcgactccctctacgtcaacgtcaacggggagtccggg
tggttcgcccgctccctggacgcctacggccgcgccgggcgggcgtgccggcgctgcgcc
gaggagggccggggcacgctgatcgtgcgcgagcagttcatgaaccgctcctcctaccgc
tgcccggcctgccagcgcaccccgcgcaacgcccggttctga
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