Kocuria flava: AS188_12850
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Entry
AS188_12850 CDS
T04206
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kfv
Kocuria flava
Brite
KEGG Orthology (KO) [BR:
kfv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kfv03019
]
AS188_12850
Enzymes [BR:
kfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AS188_12850
Messenger RNA biogenesis [BR:
kfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AS188_12850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
AAA_30
PhoH
AAA_23
ResIII
TsaE
Motif
Other DBs
NCBI-ProteinID:
ALU40494
UniProt:
A0A0U3GK11
LinkDB
All DBs
Position
2869821..2873915
Genome browser
AA seq
1364 aa
AA seq
DB search
MTASPPRTRAVVYPEDLPVSARREDIMRAITDHQVVVIAGETGSGKTTQIPKMCLELGLG
ERGLIGHTQPRRLAARSVAERIAAELGEKVGATVGYQVRFTSEVGQDSRIKLMTDGILLA
EIQHDRLLRRYSAIIIDEAHERSLNIDFLLGYLRRILPRRPDLKVIITSATIDPERFARH
FAPGAPDPVGPAERPGTPEEPGGEPEPAPVIEVSGRTYPVEIRWRPLSEPRSGDGGADAE
DAGDGLEDEDRDPIDAVCDAVEELSREAPGDILVFFAGEREIRDAQEALQGALKRIPRMA
EAEILPLFGRLSMAEQHRVFAPSGRRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSA
RTKVQRLPIERISRASADQRAGRCGRVSDGICIRLYSEEDYLSRPEFTDPEILRTNLAAV
ILQMTSVGVVNEPGDIERFPFVEPPESRAVKDGVALLRELGALDDPRAGAPGRPRRGAGD
DDARRGPLTAVGRQLAQLPVDPRLGRMIVEADRRGCAREVMVLAAALTVQDPRERPLEKR
QQADEAHKRFVDENSDFTSFLLLWRYVQEQQEELSSTRFRKLCQREHLNFLRIREWQDLY
AQLRQMGQQAGIRVGKGREVDPVGKEREIHVSLLSGLLSHIGLKDERRREYQGARGTRFA
IFPGSNLFKRSPDWVMSAELVETSRLWARVNAVIDPLWAEELAPGLIKRSVSEPHWSRAQ
GSVLAWEKVTLYGVPIVARRRIQYWRVDPAGARELFLRHALVEGDWQTRHRFFARNRARL
AEVEELENRLRRKDLRIDDEALFAFYDQRVPESVVSARHFDAWWRKARSKDEHLLDLDPE
QLIAEDARDYDESLYPRQWVQRTRDGELVLDLDYEFAPGAEQADGVTVRVPVLFLNQLDP
EPFRWHVPGLRAELVTALIRSLPKAVRRHFVPAPDVARRAVEALAADFDPATDALEPSLE
LVLRRMQGHVVPPGSWDWEAVPAHLRVRFQVRDRRNRVLGEGEDLEALRAGLRDEIRAAL
AESLGAVPAGPAGPAGTRAGRTRPPGRKDPSGRAAAAPRAPEQAPPALERSGLTAWPEQD
LPRTVESTVAGQRITGYPALVPEEAAAGGAPTVAVRILSSAAEQHAAQRRGTIALLQRSL
PSPERYVLEHLNNQEKLVFAQNPHGSVTELIADCTVAAIDKLVPPDPPFTRTEYDRVHEH
VRAELIDTVFQVTAVVEQVLSGAARVRRTLKRSASLAAVNSLNDVKAQLEHLVHPGFVAA
TGWAQLQHLPRYVRAMEVRLEKLGGHLQRDTANLLLVQKLEDDYDAALTRLPPAAPVPEQ
LRRVGWLIEELRVSLFAQELGTARTVSEKRVRRALREALDAARA
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatccccgccccgcacccgcgccgtcgtctaccctgaggacctccccgtctcc
gcgcgccgggaggacatcatgcgcgcgatcaccgaccaccaggtggtcgtgatcgccggg
gagaccggctcgggcaagaccacgcagatccccaagatgtgcctggagctgggcctgggc
gagcggggtctgatcggacacacccagccccggcgcctcgccgcccgctcggtggccgag
cggatcgccgccgagctcggcgagaaggtcggcgccaccgtgggctaccaggtgcgcttc
acctccgaggtggggcaggactcgcggatcaagctgatgaccgacggcatcctgctcgcc
gagatccagcacgaccggctgctgcgccgctactcggcgatcatcatcgacgaggcccac
gagcgctcgctgaacatcgacttcctgctgggctacctgcggcgcatcctgccgcgccgg
cccgacctgaaggtgatcatcacctcggccacgatcgacccggagcgcttcgcccggcac
ttcgccccgggcgccccggacccggtcgggcccgccgagcggcccggcaccccggaggag
cccgggggcgagcccgagcccgcgcccgtcatcgaggtctccgggcgcacctaccccgtg
gagatccgctggcggccgctgtccgagccgcgctcaggggacggcggggccgacgccgag
gacgccggcgacggcctggaggacgaggaccgggaccccatcgacgcggtctgcgacgcc
gtcgaggagctctcccgcgaggcacccggggacatcctcgtgttcttcgccggggagcgg
gagatccgcgacgcgcaggaggccctccagggggcgctgaagcggatcccgcggatggcc
gaggccgagatcctgcccctgttcggccggctgtcgatggccgagcagcaccgcgtcttc
gcgccctcggggcggcggcggatcgtgctggccaccaacgtcgcggagacgtccctgacc
gtcccgggcatcaagtacgtgatcgaccccggcaccgcccgcatctcccggtactcggcg
cgcaccaaggtccagcgcctgcccatcgagcggatctcccgcgcctcggccgaccagcgc
gcgggccgctgcgggcgcgtgtccgacggcatctgcatccgcctgtactcggaggaggac
tacctgtcccggcccgagttcacggacccggagatcctgcgcaccaacctggccgccgtc
atcctgcagatgacctcggtgggggtcgtcaacgagcccggggacatcgagcgcttcccc
ttcgtggagccgcccgagtcccgggcggtgaaggacggcgtggccctgctgcgcgagctc
ggcgccctcgatgacccgcgggccggcgcccccggccgtccccggcggggcgccggggac
gacgacgcgcgccgcggcccgctcacggccgtgggccgccagctcgcgcagctgccggtg
gacccgcggctggggcggatgatcgtcgaggccgaccggcgtggctgcgcccgggaggtc
atggtcctcgccgcggccctcaccgtgcaggacccccgcgagcgtcccctcgagaagcgc
cagcaggccgacgaggcccacaagcgcttcgtcgacgagaactccgacttcacgagcttc
ctgctgctgtggcgctacgtccaggagcagcaggaggagctgtcctcgacccggttccgg
aagctgtgccagcgggagcacctgaacttcctgcggatccgcgagtggcaggacctctac
gcccagctgcgccagatgggccagcaggccggcatccgggtcggcaagggccgcgaggtg
gaccccgtcggcaaggagcgggagatccacgtctccctgctctccgggctgctcagccac
atcgggctcaaggacgagcgccgccgggagtaccagggcgcccgcggcacccgcttcgcg
atcttcccgggctccaacctgttcaagaggtccccggactgggtgatgtccgccgagctg
gtggagacctcccggctgtgggcccgcgtcaacgccgtgatcgacccgctgtgggccgag
gagctggccccggggctgatcaagcgctccgtctcggagccgcactggtcccgggcgcag
ggctccgtgctggcctgggagaaggtcaccctctacggagtgccgatcgtcgcccggcgc
cggatccagtactggcgcgtggaccccgccggggcgcgggagctgttcctgcgccacgcc
ctcgtggagggcgactggcagacccgccaccggttcttcgcccgcaaccgggcgcgcctg
gccgaggtcgaggagctcgagaaccggctgcgccgcaaggacctgcggatcgacgacgag
gcgctgttcgccttctacgaccagcgggtgcccgagtccgtggtctcggcccggcacttc
gacgcgtggtggcgcaaggcccggtcgaaggacgagcacctgctggacctggaccccgag
cagctgatcgccgaggacgcccgcgactacgacgagtcgctctacccgcgccagtgggtg
cagcgcacccgggacggcgagctcgtgctggacctcgactacgagttcgcccccggcgcg
gagcaggccgacggcgtgaccgtgcgggtgccggtgctgttcctgaaccagctggacccg
gagccgttccgctggcacgtgccgggcctgcgcgccgagctcgtcaccgccctcatccgg
tccctgcccaaggccgtgcgccgccacttcgtgccggcccccgacgtggcccgccgggcc
gtcgaggcgctcgccgccgacttcgacccggcgacggacgcgctcgagccctccctcgag
ctggtcctgcgccggatgcaggggcacgtggtcccgcccgggtcctgggactgggaggcc
gtcccggcgcacctgcgggtgcgcttccaggtccgcgaccgccgcaaccgggtgctcggc
gagggcgaggacctggaggcgctgcgggccgggctgcgcgacgagatccgcgcggccctg
gccgagtccctcggcgcggtgccggccgggccggcgggccccgccgggacgcgggccggc
cggacgagaccgcccgggcggaaggacccctccgggcgggccgccgcggcgccgcgcgcg
ccggaacaggcgcccccggccctggagcgctcggggctgaccgcgtggccggagcaggac
ctcccgcgcaccgtggagtccaccgtcgcgggccagcgcatcacgggctacccggcgctg
gtcccggaggaggccgccgcgggcggggcccccacggtggccgtgcgcatcctctcctcg
gcggccgagcagcacgccgcgcagcgccgcggcacgatcgcgctgctgcagcggagcctg
ccctcccccgagcgctacgtcctggagcacctgaacaatcaggagaagctcgtcttcgcc
cagaacccccacgggtcggtgacggagctgatcgccgactgcacggtggccgcgatcgac
aagctcgtccctcccgacccgccgttcacgcgcaccgagtacgaccgggtccacgagcac
gtgcgcgcggagctcatcgacacggtcttccaggtgaccgcggtcgtggagcaggtgctc
tccggcgcggcgcgggtccggcgcacgctcaagcgctcggcctcgctcgccgccgtcaac
tcgctcaacgacgtcaaggcccagctggagcacctcgtgcaccccggcttcgtggcggcc
accggctgggcgcagctgcagcacctgccccgctacgtgcgcgccatggaggtgcgtctc
gagaagctcggcgggcacctgcagcgcgacaccgcgaacctgctgctcgtgcagaagctc
gaggacgactacgacgccgccctgacccggctgccgccggccgcgcccgtgcccgagcag
ctgcggcgggtcggctggctgatcgaggagctgcgcgtgtcgctgttcgcccaggagctg
ggcaccgcccggacggtctcggagaagcgcgtgcgacgcgccctcagggaggccctggac
gccgcccgcgcctga
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