Kocuria flava: AS188_14125
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Entry
AS188_14125 CDS
T04206
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kfv
Kocuria flava
Pathway
kfv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kfv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AS188_14125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kfv03021
]
AS188_14125
03400 DNA repair and recombination proteins [BR:
kfv03400
]
AS188_14125
Enzymes [BR:
kfv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AS188_14125
Transcription machinery [BR:
kfv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AS188_14125
DNA repair and recombination proteins [BR:
kfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AS188_14125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF4407
Motif
Other DBs
NCBI-ProteinID:
ALU40697
UniProt:
A0A0U3HHN5
LinkDB
All DBs
Position
complement(3153447..3157337)
Genome browser
AA seq
1296 aa
AA seq
DB search
MSNESSLGLMRIGLATADDIRTWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRYKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDARHDDLPNLQAAVDREKAQMESTRDADIAAIARELEAD
LGRVEEEGGKAAEKRKLRDAADRQMANVRKRANQEIDRLEQVWDRFKNLKVNDLEGDEAL
YRQMVDRYGMYFEGSMGAEAIKKRLESFDLEAEAESLRETIATGKGQRKTRALKRLKVVN
AFLTTDNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGKPIALPSQDMIIGLYHLTTVREGAEGEGR
SFSSVAEAIMAHDAGQLHLNALCTIELEDFVPFEGWEAPEGWEPGTPVRVQTTLGRVLFN
DTLPEDYPWDEAVADKKHLSALVNDLAERYPMASVARTLDELKDAGFHWAARSGVTVAIS
DIATPPTKPAIMEGYEAQAAKIQGQYDRGLIDDDERRSELIDIWTKATDEVAEAMRENMS
ALNTINRMVSSGARGNWMQVRQIAGIRGLVSNPKGEIMPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREADCMTERGLTLPVADVAESGARTLHE
DIENTVHGRVLAVDVADANGEVVAEAGADLSDALIAALFEAGVDTVRVRSVLTCESAVGV
CAACYGRSLASNQLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASSDGDITQGLPRI
QELFEARTPKGVAPISEVAGRVSIEDTDKALKVVVTPDNGDEAIAYPVLRRAKLLVTEGD
HVEVGQQLVSGAVDPKEVLRIRGPRQAQKHLVDEVQGVYRSQGVGIHDKHVEVIVRQMLR
RVTIIESGDTDLLPGELVENVRFLEANRKAVAETARPAAGRPELMGITKASLATDSWLSA
ASFQETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLARYNNVDVEPTEEAKASLF
TEPGSFSDFSYADENSGQTPAEFQAIPLEDYDFGSN
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgaatcctcactcggactcatgcggatcggtcttgcgaccgcggacgacatc
cggacctggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgctacaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgtcgcgagcgcatgggccacatcgagctggccgcgccc
gtgacccacatctggtacttcaagggcgtgccctcgcgcctgggctacctgctggacctc
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacctcggtggac
gaggacgcccgccacgacgacctgccgaacctgcaggccgccgtggaccgggagaaggcc
cagatggagtccacccgcgacgccgacatcgcggcgatcgcccgtgagctcgaggccgac
ctcggccgcgtcgaggaggagggcggcaaggccgcggagaagcgcaagctgcgcgacgcc
gccgaccgccagatggccaacgtgcgcaagcgcgccaaccaggagatcgaccgcctcgag
caggtctgggaccgcttcaagaacctcaaggtcaacgacctcgagggcgacgaggccctg
taccggcagatggtcgaccgctacggcatgtacttcgagggctccatgggcgccgaggcg
atcaagaagcgcctcgagtccttcgacctcgaggccgaggccgagtcgctgcgcgagacg
atcgccaccggcaagggccagcgcaagacccgggccctgaagcggctgaaggtcgtcaac
gcgttcctgaccacggacaactcgccgctgggcatggtcctcgacgccgtcccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggcggccggttcgcgacctccgacctc
aacgacctctaccggcgcgtgatcaaccgcaacaaccgcctcaagcggctgctggacctc
ggcgcccccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtggactcg
ctgttcgacaacggccggcgcggccgcccggtcaccgggccgggcaaccgtgcgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctgggcaag
cgcgtggactactcgggccgctccgtcatcgtggtgggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagcccttcgtgatgaagcggctc
gtggacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgctaccgc
ccccaggtgtgggacgtgctcgaggaggtcatcaccgagcaccccgtgctgctcaaccgt
gcgcccaccctgcaccgcctgggcatccaggccttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtgtgcggcgcgttcaacgccgacttcgacggcgaccag
atggccgtgcacctgcccctgtccccggaggcccaggccgaggcgcgcatcctgatgctc
tcctcgaacaacatcctcaagccctcggacggcaagccgatcgccctgccctcgcaggac
atgatcatcgggctctaccacctcaccaccgtccgcgagggcgccgagggggagggccgg
tcgttctcctccgtggccgaggcgatcatggcccacgacgccgggcagctgcacctcaac
gccctgtgcacgatcgagctcgaggacttcgtgccgttcgagggctgggaggcccccgag
gggtgggagcccgggacgccggtgcgcgtgcagaccaccctgggccgcgtgctgttcaac
gacacgctgcccgaggactacccgtgggacgaggccgtcgccgacaagaagcacctctcg
gcgctggtcaacgacctcgcggagcgctaccccatggcctccgtggcgcgcaccctcgac
gagctcaaggacgccggcttccactgggcggcccgctccggggtgaccgtggcgatctcg
gacatcgcgaccccgcccaccaagcccgccatcatggagggctacgaggcgcaggccgcg
aagatccagggccagtacgaccgcggtctgatcgacgacgacgagcgccgctcggagctg
atcgacatctggaccaaggccaccgacgaggtcgccgaggcgatgcgcgagaacatgtcg
gcgctgaacacgatcaaccggatggtctcctccggcgcccgcggcaactggatgcaggtg
cgccagatcgccggcatccgcgggctcgtgtccaacccgaagggcgagatcatgccccgc
ccgatcaagtcctcctaccgcgagggcctgtcggtgctggagtacttcatcgcgacccac
ggcgcccgcaagggcctggccgacaccgcgctgcgcacggcgaactcgggctacctgacc
cgtcgtctcgtggacgtctcccaggacgtcatcgtgcgcgaggcggactgcatgaccgag
cgcgggctcaccctgcccgtcgccgacgtcgcggagtccggggcgcgcaccctgcacgag
gacatcgagaacacggtgcacgggcgcgtgctggccgtggacgtcgccgacgccaacggc
gaggtcgtggccgaggccggcgcggacctctccgacgccctgatcgccgcgctgttcgag
gcgggggtcgacacggtgcgcgtgcgctcggtgctgacctgcgagtccgcggtgggcgtg
tgcgcggcgtgctacggccgctcgctggcctccaaccagctcgtggacatcggcgaggcc
gtcggcatcatcgcggcccagtcgatcggcgagcccggcacgcagctgaccatgcgcacc
ttccacaccggcggtgtcgcgtcctcggacggcgacatcacccagggtctgccgcgcatc
caggagctcttcgaggcgcgcacccccaagggtgtcgccccgatctccgaggtcgccggc
cgcgtgagcatcgaggacaccgacaaggcgctgaaggtcgtcgtcaccccggacaatggg
gacgaggcgatcgcctacccggtgctgcgccgtgcgaagctgctcgtgaccgagggcgac
cacgtcgaggtcggccagcagctggtctcgggcgccgtcgacccgaaggaggtgctgcgc
atccgcggtccgcggcaggcgcagaagcacctcgtggacgaggtccagggcgtgtaccgc
tcccagggcgtgggcatccacgacaagcacgtcgaggtcatcgtgcggcagatgctgcgg
cgcgtgacgatcatcgagtccggcgacaccgacctgctgccgggcgagctcgtcgagaac
gtccgcttcctggaggccaaccgcaaggccgtggcggagaccgcgcgccccgcggccggg
cgcccggagctgatgggcatcaccaaggcgtcgctggcgaccgactcgtggctgtccgcc
gcgtccttccaggagacgacccgcgtgctcacccaggccgccatggagggcaagtccgac
ccgctggtggggctcaaggagaacgtcatcatcggcaagctcatcccggccggcaccggg
cttgcgcggtacaacaacgtcgacgtggagccgaccgaggaggcgaaggcctcgctgttc
acggagcccgggtcgttctcggacttcagctacgccgacgagaactccgggcagaccccc
gccgagttccaggcgatcccgctggaggactacgacttcggctccaactga
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