Kocuria flava: AS188_14330
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Entry
AS188_14330 CDS
T04206
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kfv
Kocuria flava
Pathway
kfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS188_14330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kfv03019
]
AS188_14330
03009 Ribosome biogenesis [BR:
kfv03009
]
AS188_14330
Enzymes [BR:
kfv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AS188_14330
Messenger RNA biogenesis [BR:
kfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AS188_14330
Ribosome biogenesis [BR:
kfv03009
]
Prokaryotic type
rRNA helicases
AS188_14330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
AAA_30
CMS1
TcaA_2nd
Cas3-like_C_2
SNAP
Motif
Other DBs
NCBI-ProteinID:
ALU40728
UniProt:
A0A0U3HIM2
LinkDB
All DBs
Position
complement(3199681..3201540)
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AA seq
619 aa
AA seq
DB search
MSNDTPAPDATTSEEPTTTFADLGVDPRVLAALDEVGYEKPSPIQAATIPVLLSGRDVVG
LAQTGTGKTAAFAVPALSRLAELADVNGVSRDVQVLVLAPTRELALQVGEAFSSYATHLE
DFHVLPVYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHLTKGSLDLSNLQYVVLDEADEML
RMGFAEDVEQILSRTPADKQVALFSATMPPAIRKIAKQYLRDPQEIAVKGRTTTGTNTRQ
RYLQVMGSHKMEAMTRILEVGDYDGVIVFVRTKAATEEVADRLKARGYAAAAINGDIPQN
MRERTVEALREGKVDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRS
GEAILFMTPREKYLLRAIEKATRQPVEQMRMPSTEDVNRTRKERFAQQITDTIESEDLAA
FRELVEQYQSEHDVDAVEVAAAIAVMAQDGRPFFVEELPEAPQRTRDRDRGARGEDRPRR
EPRSEKGMATYRLAVGHRHRVSPGSIVGALTNEGGLDGAQIGAIDIRSTHTLVGLPENLP
AAAADRLAGTRINGELIRLELDRGPAGGGGGRPRGTSSYQDRPRRGGHDGGERGGFRKKA
GPRGRDGEGGFRKPRHKKY
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgacacccccgcccccgacgccaccacgtccgaggagccgacgacgacgttc
gccgacctcggcgtcgacccccgcgtgctcgccgcgctcgacgaggtcggctacgagaag
ccctcgcccatccaggccgcgaccatccccgtgctgctctccgggcgcgacgtcgtgggc
ctggcccagacgggcaccgggaagaccgccgcgttcgccgtcccggccctgtcccgcctc
gccgagctcgccgacgtcaacggcgtctcccgcgacgtccaggtgctcgtgctcgccccc
acccgcgagctggccctgcaggtgggggaggccttctcctcctacgccacgcacctcgag
gacttccacgtcctgcccgtctacggcggttcgccctacgggccccagctggccgggctg
cgccgcggcgcccaggtcgtcgtcggcacccccgggcgcgtgatcgaccacctcacgaag
ggctccctggacctgtcgaacctgcagtacgtggtcctcgacgaggccgacgagatgctg
cggatgggcttcgccgaggacgtcgagcagatcctctcgcgcaccccggcggacaagcag
gtcgccctgttctccgcgaccatgcccccggccatccgcaagatcgccaagcagtacctg
cgtgacccgcaggagatcgcggtgaagggcaggacgaccacgggcacgaacacccgccag
cgctacctgcaggtgatgggctcccacaagatggaggccatgacccgcatcctcgaggtt
ggggactacgacggcgtcatcgtcttcgtgcgcaccaaggccgccacggaggaggtcgcc
gaccggctcaaggcccgcggctacgccgccgccgcgatcaacggcgacatcccgcagaac
atgcgcgagcgcaccgtcgaggccctgcgcgagggcaaggtcgacatcctcgtggccacg
gacgtcgccgcccgcggcctcgacgtcgagcggatctccctcgtcgtcaactacgacatc
ccccacgacaccgagtcctacgtccaccggatcgggcgcaccggccgcgccgggcgctcc
ggcgaggcgatcctgttcatgaccccccgggagaagtacctgctgcgggccatcgagaag
gccacccgccagccggtcgagcagatgcggatgccctccaccgaggacgtcaaccgcacc
cgcaaggagcgcttcgcccagcagatcacggacaccatcgagtccgaggacctcgccgcg
ttccgcgagctcgtcgagcagtaccagtccgagcacgacgtcgacgccgtggaggtcgcc
gccgcgatcgctgtgatggcccaggacggccggccgttcttcgtcgaggagctgcccgag
gccccgcagcgcacccgcgaccgcgaccgcggggcccgcggcgaggaccggccccgccgc
gagccgcgctccgagaagggcatggccacctaccgcctggccgtgggccaccgccaccgg
gtctccccgggctcgatcgtcggggcgctgaccaacgagggcggcctggacggcgcgcag
atcggcgcgatcgacatccgctccacgcacaccctggtcgggctgccggagaacctgccc
gccgccgccgcggaccggctggccggcacccggatcaacggcgagctgatccgcctcgag
ctcgaccgcggccccgccggcggtgggggcgggcgcccccgcggcacctcctcctaccag
gaccggccccgccgcggcggccacgacggcggcgagcgcggcggcttccgcaagaaggcc
ggcccgcgcgggcgcgacggcgagggcggcttccgcaagccccgccacaagaagtactga
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