Kangiella geojedonensis: TQ33_1942
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Entry
TQ33_1942 CDS
T03889
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kge
Kangiella geojedonensis
Pathway
kge03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kge00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TQ33_1942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kge03021
]
TQ33_1942
03400 DNA repair and recombination proteins [BR:
kge03400
]
TQ33_1942
Enzymes [BR:
kge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TQ33_1942
Transcription machinery [BR:
kge03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TQ33_1942
DNA repair and recombination proteins [BR:
kge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TQ33_1942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AKE52876
UniProt:
A0A0F6RDG2
LinkDB
All DBs
Position
complement(2138141..2142367)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLNLVKQQSQSEEFDAIRIGLASPDQIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGIICEKCGVEVTLTKVRRERMGHIDLACPVAHIWFLKSL
PSRIGMLMDMTLRDIERVLYFEAFVVTDPGMTTLETGQLLSEEGYLDALEEFGDDFEAKM
GAEAVSELLDHIDLKEEAHRIREEEIPSTNSETKLKKLSKRLKLLEAFLESGNDPQWMIM
KVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKKMALELFKPFIYSKLELRGLATTIKAAKKMVEREEPIVWDILEEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTIEAQLE
SRALMMSTNNILSPANGEPIIVPTQDVVLGLYYLTRDRVNAKGEGMVFVDADEVQRAYAN
GAVDLHARVKVRLPMVHFDEEGNRTESLDLVETTVGRSLLWGIVPEGISFDLVNQAMTKK
AISRMVNTCYRERGLKATVIFADQLMYTGFSYATRSGTSVGIEDMAIPDVKAGIIESAEA
EVAEIQDQFNSGLVTQGERYNKVVDIWSHTNEKVAKAMMDHIGTDDIENSDGEVVSQPSF
NSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIEMPITANFREGLDVSQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDMVITTEDCGTENGLYMTPLIEGGDVVEPLRERV
LGRVVAEHVYVPGSDDILAEAGTLLDEKWVDILEQNSVDEVKVRSVITCETRNGVCAACY
GRDLARGHIINHGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASADNNVQIKNDGTLR
LKNAKTVDRKDGKQVIVSRSSELNVVDEFGRERERYKLPYGAVLAKKEGEEAKGGDIVAN
WDPHTHPIITELDGKIQFVDMVEGVNIERQTDELTGLSSIVITENKQRSGSKSSDVKPAI
KLLDAKGKELCIPGTDMPAVYFLPANAIVSLEDGSDVSIGDAIARIPQESSKTKDITGGL
PRVADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPHDNGDTYEELIPKWRQLNI
FEGEKVEKGEVVSDGADNPHDILRLKGITELARYIVNEVQEVYRLQGVGINDKHIEVVIR
QMLRKCIVTEPGDSRFLRGDQMEVIRVLEANDKLIEEGKEPIKFERVLMGITKASLATES
FISAASFQETTRVLTEAAVSGKMDDLNGLKENVIVGRLIPAGTGLTYHEERRRKRAAELQ
IEDVVGPSADDVEQALSDELSSMEDSEA
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaatttagttaagcagcagagtcagtccgaagagtttgatgcaatc
cgaattggattagcatcaccggatcaaatccgctcgtggtcttacggcgaagttaaaaag
cctgagaccattaactatcgtacctttaaaccagagcgtgacggtttattctgtgccaaa
atttttggtccagtaaaagactacgaatgtttatgtggtaaatataagcgtttgaagcac
cgcggtattatctgtgaaaagtgtggtgtagaagttactttgactaaagtacgtcgtgag
cgtatgggtcacattgacctagcatgtccagtggcgcacatctggttcttaaaatcactg
ccaagccgtattggtatgttgatggatatgacactacgcgatattgagcgtgtgttgtat
tttgaagcattcgtggttactgacccaggcatgacaactcttgagactggccagctatta
agcgaagaaggctatcttgacgcgttggaagagtttggtgatgactttgaagcgaagatg
ggtgcggaagcggtaagtgaacttcttgaccatatcgatctaaaagaagaagcgcaccgt
attcgtgaagaagaaattccatcaacgaattctgagacaaaacttaagaaattaagcaaa
cgtctaaaactactagaagctttccttgagtcgggtaacgatcctcaatggatgatcatg
aaggtattgccagttcttccaccagatttgcgtccgttagtaccgctagatggtggtcgt
ttcgcaacatcggatttgaacgatttataccgtcgtgtaattaaccgtaacaaccgttta
aagcgtttattagatcttaacgctcctgacatcatcgttcgtaacgaaaagcgtatgttg
caggagtctgttgatgcgctacttgataacggtcgtcgtggtcgtgccatcacaggctct
aacaagcgtccattgaaatctttggcagacatgatcaaaggtaagcaaggtcgtttccgt
cagaaccttcttggtaagcgtgttgactactcgggtcgttcggtgatcgttgttggtcca
acattaaaattacaccagtgtggtcttccgaagaagatggcattggagctatttaagcca
ttcatctacagcaagcttgaacttcgtggtctagcgacaacgattaaagccgctaagaaa
atggttgagcgtgaagaacctattgtttgggatatcctagaagaagtgattcgtgagcat
ccggtactattaaaccgtgcaccaacacttcaccgtttgggtatccaggcgtttgagcct
gtactgattgaaggtaaagcgattcagcttcacccattagtttgtacagcctacaacgct
gactttgatggtgaccaaatggcggtccacgttcctttaactatcgaagctcagttagag
tctcgtgcgttaatgatgtcaacaaacaacattctttcgcctgcaaacggtgagccaatt
atcgttcctactcaggacgtggtacttggtttgtactacttaacacgtgaccgtgttaat
gcgaaaggtgaaggcatggtcttcgttgatgctgacgaagtacagcgtgcttatgcaaac
ggcgctgtcgatttgcacgcaagagttaaagtacgtctaccaatggttcatttcgatgaa
gaaggtaaccgtacagagtcattagacttggtggaaacaacagtgggtcgctcacttctt
tggggcatcgttcctgaaggtattagcttcgacctagtgaaccaagcaatgacgaaaaaa
gcaatctcgcgcatggtcaacacgtgttaccgtgagcgtggccttaaagcgactgttatt
tttgctgaccaattaatgtataccggcttctcgtatgcgactcgttcaggtacttcggta
ggtatcgaagacatggcgattccagacgttaaagcaggcatcattgaatcagcagaagca
gaagttgctgagattcaagaccagtttaactctggtttagttactcagggcgagcgttat
aacaaggttgttgatatctggtcgcataccaatgaaaaagttgcgaaagcgatgatggat
catattggtacagacgatattgagaacagcgacggtgaagtcgtatcccaaccatcgttt
aactcgatctttatgatggcggactcaggcgctcgtggtagtgctgcacagattcgtcag
ctagcgggtatgcgtggtttgatggcgaaaccggatggctcgattattgaaatgccgatt
acagcgaacttccgtgaaggtctggacgtatcgcagtactttatttcgacgcacggtgcg
cgtaaaggtttggccgataccgcattgaaaacagcaaactcgggttacttaactcgtcgt
ttggtggatgttgcacaagatatggttattactaccgaagactgtggcactgaaaatggt
ctatacatgacgccgctgattgaaggtggtgacgttgtagaacctttacgtgagcgagtt
cttggtcgtgttgttgctgagcatgtttatgttcctggtagcgacgacattcttgctgaa
gcaggtacactacttgacgagaagtgggtagatatccttgagcagaactctgttgatgaa
gtaaaagttcgctcggttattacttgtgaaacccgtaacggtgtttgtgctgcgtgttat
ggtcgtgatttggctcgtggtcatattatcaaccatggtgagtctgttggtgttatcgct
gctcagtctattggtgagccgggtacacagcttacaatgcgtacgttccacattggtggt
gcggcatctcgtgcatctgcagataacaatgtacagatcaaaaacgacggtacacttcgt
ctgaaaaatgcgaaaacggttgaccgtaaagatggtaaacaagttatcgtatcgcgttca
tcagagttaaatgttgttgatgagtttggtcgtgagcgtgagcgttataagcttccttac
ggtgctgtattagcgaagaaagaaggtgaagaagcgaaaggtggcgacatcgttgctaac
tgggatccgcacacgcacccaattattaccgagctagacggtaagattcaatttgttgac
atggttgaaggtgtcaacatcgagcgtcaaacggatgaattaaccggtttaagctcaatt
gttattactgagaacaagcaacgttcaggtagtaaatcttctgacgttaaaccagcgatt
aagttgttagacgcaaaaggtaaagagttgtgtattccgggtacggatatgccagcagtt
tacttcttgccagccaacgctatcgtaagtttggaagatggttctgacgtaagtattggt
gatgcgattgctcgtattcctcaagaaagctcgaagacaaaagatattacgggtggtcta
cctcgagtagccgacctgttcgaagctcgtaaacctaaagagccagcaattcttgctgaa
atttcgggtactgtaagctttggtaaagaaactaaaggtaagcgtcgtctagtgataact
cctcatgacaacggtgatacctatgaagaattgattcctaaatggcgtcagctgaacatc
tttgaaggtgagaaagttgagaagggtgaggttgtgtctgacggtgcagataatccacac
gacattcttcgtcttaaaggaatcacagaacttgcgcgttacatcgtgaatgaagttcaa
gaagtttatcgtctccaaggtgttggaattaacgataagcacattgaagttgttattcgt
cagatgttacgtaagtgtatcgtaactgagccaggtgactctcgcttcctaagaggtgat
caaatggaagtcattagagtgcttgaagcaaacgataagttgattgaagaaggtaaagaa
ccaatcaagttcgaaagagtattgatgggtattactaaagcttcattagcaactgaatcg
tttatctcggcggcgtcattccaggaaacgactcgtgtccttaccgaagcggctgttagc
ggtaagatggatgacttgaatggcttgaaagaaaacgtgattgtgggacgtctaattcca
gcaggtactggtttgacataccacgaagagcgtcgtcgcaaacgtgctgcagaactacaa
attgaagatgttgtaggtccttcagcagatgatgttgagcaagctctttctgatgagttg
agctcaatggaagatagcgaggcttaa
DBGET
integrated database retrieval system
