Kangiella geojedonensis: TQ33_1956
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Entry
TQ33_1956 CDS
T03889
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
kge
Kangiella geojedonensis
Pathway
kge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TQ33_1956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kge03019
]
TQ33_1956
03009 Ribosome biogenesis [BR:
kge03009
]
TQ33_1956
Enzymes [BR:
kge01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
TQ33_1956
Messenger RNA biogenesis [BR:
kge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TQ33_1956
Ribosome biogenesis [BR:
kge03009
]
Prokaryotic type
rRNA helicases
TQ33_1956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
AAA_19
HEM4
Motif
Other DBs
NCBI-ProteinID:
AKE52890
UniProt:
A0A0F6TS10
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All DBs
Position
2157864..2159651
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AA seq
595 aa
AA seq
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MTSKDSTTSFDQLELAPAVLKAIQEVGYEQPSPIQQASIPVLLTGRDIIGQAQTGTGKTA
AFALPLLSRIDPKDRTTQVLVLAPTRELALQVAEACQTYAKHMEQFTILPIYGGQRYDTQ
LRQLKRGAQVVVGTPGRVMDHIRRGTLKLDSLKALVLDEADEMLRMGFIDDVEWILGHTP
DQRQIALFSATMPNQIKKVAQKYLSNPEHIKIETKTSTAKTISQRYWFVSGLHKLDALTR
ILETETFDGMIIFVRTKTATMELAEKLNARGFRADALNGDIPQNTREKIVDKLKRGKIDV
LLATDVAARGLDVERISHVINYDIPYDTESYVHRIGRTGRAGREGHAILFVSHREKRMLK
AIERATNQPIEEMHMPTIDAINETRVERFATTITETLASQDLQFYTDLVEKYVKDNDQDW
PQLAAALAKMAAGDELLLKERPRKERESRDRDDRRDDRRDRKRDRNSKDRPRRENTFSAQ
AQPLADHPDVEMERYRIELGRNHDVKVGSIVGAIANEADIDSEYIGRIDLFDEFTTVDLP
AGMPKEVQSILAKARVAGKPMQLAPIGKQEGGKGKPKAKDKDKGKPKAKKRKPKS
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgacatctaaagattctacaaccagttttgatcaactggaactcgcgcctgcggtattg
aaagctattcaagaagtcggttacgagcaaccatctccaattcaacaagccagtatcccc
gtccttttaactgggcgagacattattggtcaagcacaaaccggtactggtaaaacggca
gcttttgctttgcctctcttatccagaattgatccaaaagacagaactactcaagttttg
gtattggcacctactcgtgagcttgcactgcaagttgccgaagcctgccaaacttatgct
aagcacatggaacagttcactattctgccaatttacggcggtcaacgttatgacacccag
cttcgtcaacttaaacgtggcgctcaggttgtagtcggaacgcctggccgagtcatggat
catattcgacgtggcacccttaagcttgattccttaaaagctttagtacttgatgaagcc
gatgaaatgttgcgcatgggattcattgacgacgttgaatggattttgggacatactccc
gatcagcgtcaaattgcgttgttctctgcgaccatgccaaaccaaattaagaaggttgct
caaaaatacttgagcaatcctgagcacattaaaattgaaaccaaaacatcaacggcgaaa
accattagtcagagatactggttcgttagtggactacacaagctagacgctttaacccga
attctcgaaactgaaactttcgacggcatgattatctttgtacgcactaaaacggcgacc
atggaattagccgagaagttgaatgctcgaggtttcagagctgatgcactcaatggcgat
attccgcaaaacacccgtgagaaaattgtcgataaactaaagcgcggaaaaattgatgtt
ctgttagccacagacgtcgcggctcgtggacttgatgtagaacgtattagtcacgttatc
aactatgacattccttacgacacagaatcttacgtacaccgtattggtcgtacaggtcgt
gcggggcgtgaaggtcatgctattttgtttgtctctcaccgcgagaaacgcatgttgaaa
gctattgagcgtgcgacaaaccaaccaatcgaagaaatgcatatgccaactatcgacgcg
attaatgaaactcgtgtcgaacgtttcgctactaccattacagaaactttggcaagccaa
gacttacaattctatacagatttagtcgaaaaatatgtcaaagacaatgaccaagactgg
ccacagcttgccgccgcattagcgaaaatggctgctggtgacgagttactattaaaagaa
cgacctcgcaaagaacgtgagagtcgtgatcgtgacgaccgtcgcgatgaccgcagagat
cgcaaacgcgatcgtaatagcaaagatcgtccacgtcgcgaaaatactttttctgcacaa
gcgcaaccattggccgatcatcctgatgtcgaaatggagcgttaccgtattgagctaggt
cgaaaccacgatgtgaaagttggtagcattgttggtgctattgccaatgaagccgatatc
gacagtgaatacatcggacgaatcgacttatttgacgaattcacaacggttgatcttcca
gcaggtatgccaaaagaagttcaatctattctcgctaaagcacgcgttgcgggtaagcca
atgcaactcgcaccaattggtaagcaggaaggtggaaaaggtaaacctaaggcaaaggac
aaagacaagggtaagccgaaagccaaaaaacgcaaaccaaagtcttaa
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