Kangiella geojedonensis: TQ33_2050
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Entry
TQ33_2050 CDS
T03889
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
kge
Kangiella geojedonensis
Pathway
kge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TQ33_2050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kge03019
]
TQ33_2050
03016 Transfer RNA biogenesis [BR:
kge03016
]
TQ33_2050
Enzymes [BR:
kge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TQ33_2050
Messenger RNA biogenesis [BR:
kge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TQ33_2050
Transfer RNA biogenesis [BR:
kge03016
]
Prokaryotic type
tRNA degradation factors
TQ33_2050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
NuiA_2
Motif
Other DBs
NCBI-ProteinID:
AKE52979
UniProt:
A0A0F6TRW5
LinkDB
All DBs
Position
complement(2257774..2259894)
Genome browser
AA seq
706 aa
AA seq
DB search
MDYTKKSFQYGGREVTIETGRVARQASGAVIVDVEGTTAFVTVVGKKEAKEGQGFFPLTV
NYQEKTYAAGKIPGGFLKREGRPSDEETLTARLIDRPLRPLFPEGFLNEVQVVITIVSIN
PEVDPAVPSMIGASAALAISGIPFAGPIGAARVGYIDGEYALNPSTTDMENSKLDLMVAG
TDKAVLMVESEADELPENVMLGAVMYGHQELQVAIQAIKELQAEAGKPAWDWTAPEKNTA
LYDAVKEKMHGAIVEAYQIADKAERYDKINELSAEAVEALAGDEEGQPSAEEVKEVFHDI
EKEVVRTRIVSGEPRIDGREPDMVRALDIRTGVLPRTHGSAIFTRGETQALVVATLGTER
DAQIKDSIMGDAKDHFMMHYNFPPYCVGETGFMGSPKRREIGHGRLAKRGVLAMVPTIAE
FPYTLRVVSEITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGTSNGITALQMDIKIDGITQEIMEKALHQAQGGRLHILNVMNEA
IDKPREDISEHAPRITAIKIPVDKISEVIGKGGSTIRALTEETGATIEIEDDGTVKVASS
DSEGAAEAVRRIEMITMEITAGMEFEGKVVRLADFGAFVQITPGKDGLVHISQIAHERVN
KVTDYLKEGDIVKVKVLEVDRQGRIRLSMKALIDPPAQEEAPAGQE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtggattatacaaaaaaatcttttcaatacggtggccgcgaagtcactatcgaaactggt
cgcgtagctcgtcaggcatctggtgcagtcatcgtcgacgtcgaaggaactaccgcattt
gtaacggtggttggtaagaaggaagcgaaagaaggacaaggtttcttcccgctaacagta
aactaccaagagaaaacatacgctgcgggtaaaatcccaggcggcttcttgaagcgtgaa
ggtcgtccgtcggacgaagaaacgttaacggctcgtttaattgaccgtccgttacgtcct
cttttcccagaaggctttttgaacgaagttcaggttgttattactatcgtttcaattaac
ccagaagttgatccagcagtaccatcaatgattggtgcatctgcggcattggcaatttct
ggtattccattcgctggcccgattggtgcggcgcgcgttggttatattgatggtgaatat
gcattaaacccatcaacaactgacatggaaaactcaaagttagatttaatggttgctggt
actgataaagcggtactgatggttgagtcagaagctgacgagttacctgaaaacgtgatg
cttggcgctgttatgtatggtcaccaagagttacaagtcgcgattcaggcaattaaagaa
ttacaagccgaagcgggtaagcctgcttgggattggactgctccagagaaaaatactgct
ttatacgacgccgtaaaagaaaaaatgcacggcgcaattgttgaggcgtatcaaatcgcg
gacaaagctgagcgttatgacaaaattaacgagttatctgctgaggctgtagaagcatta
gcgggcgacgaagaaggccagccttctgctgaagaagttaaagaagttttccacgatatc
gaaaaagaagtggttcgtactcgaatcgtttctggtgagccacgtattgatggccgtgaa
cctgatatggttcgcgcattggatatccgcacgggtgttcttccacgtactcacggttct
gcgatttttactcgtggtgaaactcaggccctagttgttgcaactttaggtactgagcgt
gatgcacagattaaagacagcattatgggtgacgctaaagatcacttcatgatgcactat
aacttccctccatactgtgtgggcgaaactggtttcatgggttctccaaaacgtcgcgaa
atcggtcatggccgtttagcgaagcgtggtgttcttgctatggttccaaccatcgctgaa
ttcccatacacattgcgtgtagtatctgaaatcacggaatcaaacggttctagctcaatg
gcgtctgtctgtggtacttcattagcgttaatggacgctggtgtaccaatgaaagcacct
gttgctggtatcgcgatgggcttggtcaaagaaggcgacaactttgttgttctttctgac
atcttaggtgacgaagaccaccttggtgatatggactttaaagttgcgggtacctctaat
ggtattacagcacttcaaatggacatcaagattgacggtattactcaagaaatcatggaa
aaagcacttcaccaagcacaaggtggccgcttacatatcttgaacgtcatgaacgaagcg
attgataagcctcgtgaagatatttctgagcatgctccacgtatcactgcgatcaagatc
ccagtagacaaaatctctgaagttattggtaaaggtggttcaactatccgtgccctaact
gaagaaactggtgctacgattgaaatcgaagatgacggtacggttaaagtcgcttcaagc
gactctgaaggtgccgcagaagcagttcgccgtatcgaaatgattactatggaaatcacc
gctggaatggaatttgaaggcaaagtcgttcgtttagcagacttcggtgcattcgttcaa
attactccaggaaaagatggtctagtacatatttcacaaatcgctcatgagcgcgtgaat
aaagtaactgactacttgaaagaaggtgatattgttaaagttaaagtactagaggtcgat
cgccaaggtcgtatccgtcttagtatgaaagctttgattgacccaccagcgcaagaagaa
gcgccagctggtcaagagtaa
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