Kluyvera genomosp. 3: GY169_14660
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Entry
GY169_14660 CDS
T11119
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kgn Kluyvera genomosp. 3
Pathway
kgn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kgn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GY169_14660 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kgn03019
]
GY169_14660 (rne)
03009 Ribosome biogenesis [BR:
kgn03009
]
GY169_14660 (rne)
Enzymes [BR:
kgn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GY169_14660 (rne)
Messenger RNA biogenesis [BR:
kgn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GY169_14660 (rne)
Ribosome biogenesis [BR:
kgn03009
]
Prokaryotic type
rRNA processing factors
GY169_14660 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QIR27969
UniProt:
A0A6G9RPT1
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All DBs
Position
3099434..3102661
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AA seq
1075 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHISALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGGVRCIIVPNDEME
TPHYSVLRVRKGEETTTLSYLLPKLHEEAMALPVEEEFVERKLPEQPALATFVMPEVPEP
TAEKAAPAAAQPKAAAVAAPAAPGLLSRFFAALKSLFAGSPEKAVEAQPEKQEAKPERQQ
ERRKPRQNNRRDRNERSDRRNDRNERNDRNENAEGREPRESREGRDDNRRNRREKPQQSE
ARENRQQNVVDDAEKSRSRDEQQQPRRERNRRRSDDKRQQPQEAKPQAREEQAVAAPEAT
QEERVQTMPRRKPRQLAQKVRIETPEQTAARELIADEPQQQEAPRTALAKVDLPAVVDAP
VQGEQDENTEGRDNNGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEL
ASGKVWITYPIAQVQTEAEAPVEQDVTEQPIVAQAAEQAVVAEPAVVETVVEAPEVAAPA
AVAEPVTVAQETAPAQEEAPVSAVEEAPTAVVEETVAQEVVVDEAPVVAEEVKAEAETPV
VEAAPVVEAAPVIDSAPVAEEPVVEEAPVEETPVVAAPVVAEPVVTAPAPAAKSSDTNRA
SAPMTRAPAPAYVPESPRHSDWVRPSFNFDGKGSAGGHSATHTATAEPTRPQSVE
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgtgtcgccctcgttgat
gggcagcgtctgtacgatctggatattgaaagcccaggacacgaacagaaaaaagcgaac
atctacaaaggcaaaattacccgtattgaaccgagtctcgaagccgcatttgttgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgctcgcgaatatttcccagcc
aactacagctctcacggtcgtccgaacatcaaagatgtgctgcgtgaaggccaggaagtc
atcgtccagattgataaagaagaacgcggcaataaaggcgctgcgctgacgacctttatc
agcctcgcaggtagctacctggtgctgatgccgaacaacccgcgcgcgggcggtatctct
cgccgtatcgaaggcgacgatcgcaccgaactgaaagaagcgctggctagcctcgagctg
ccggacggcatgggcttaatcgtgcgtaccgcgggcgtcggcaaatcagccgaagcgctg
cagtgggacttaagcttccgtctgaagcactgggaagctattcagaaagccgctgaaagc
cgccctgctccgttcctgattcaccaggaaagcaacgtgatcgtgcgtgccttccgcgac
tatctgcgccaggatatcggcgaaatcctgatcgacaacccgaaagtgatggaaatggcg
cgtcagcacatttctgcactggggcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccactaccagattgaatcgcagatcgagtccgcgttccag
cgtgaagtacgtctgccttccggcggttctatcgttatcgatagcaccgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacccgcggcggcgatatcgaagaaaccgcgttc
aacaccaacctcgaagcggctgatgaaattgctcgccagctgcgtctgcgcgaccttggt
ggcctgatcgttatcgactttatcgatatgaccccggttcgccaccagcgcgctgtagaa
aatcgtctgcgcgaggccgtccgtcaggaccgtgcgcgtatccagattagccacatttcc
cgctttggcctgctggagatgtctcgccagcgtctgagcccgtcgcttggcgaatccagc
caccacgtctgcccgcgctgctccggcaccggcaccgtgcgtgacaacgaatcactgtcg
ctctccattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagtccac
gccattgttccggtgccgattgcctcttacctgctgaacgaaaaacgtgctgcggtaagc
gccattgaatcccgccagggcggcgtgcgttgcatcatcgtcccgaacgacgagatggaa
accccgcactactccgtgctgcgcgtgcgtaaaggcgaagaaaccaccacgctgagctac
ctgctgccgaagctgcacgaagaagccatggcgctgccggttgaagaagagtttgttgag
cgtaagctgcctgagcagccggcgctggcgaccttcgtgatgccggaagtgcctgagcct
accgcagagaaagccgcgccagccgccgctcagccgaaagccgctgcagttgccgcgccg
gcggctccaggcctgctctctcgtttctttgctgcgctgaaaagcctgtttgccggtagc
ccggagaaagcggttgaagcacagccggagaaacaagaagcaaaacctgagcgtcagcag
gaacgccgcaagccgcgtcagaataaccgtcgcgaccgtaacgagcgtagcgatcgtcgt
aatgaccgcaacgagcgcaatgaccgtaacgaaaacgccgaaggccgcgaaccgcgtgaa
agccgtgaaggtcgcgacgataaccgtcgtaaccgtcgcgagaaaccgcagcagtctgaa
gcacgcgaaaaccgccagcagaacgtcgtggatgacgcggagaaatcccgctcacgtgac
gaacagcagcagccacgccgtgaacgtaaccgccgccgtagcgacgataaacgtcagcag
ccgcaggaagcgaaaccgcaggctcgtgaagaacaggccgttgccgcaccggaagccaca
caggaagaacgcgtacagactatgccgcgccgcaaaccgcgccagctggcacagaaagtc
cgcatcgaaacccctgagcagactgccgctcgtgaactgattgcggatgaaccgcagcag
caggaagcgccgcgtaccgcgctggcgaaagtcgatctgccggcggtcgttgatgcgcca
gtacagggcgagcaggatgaaaatacggaaggtcgtgataacaacggcatgccgcgtcgt
tcccgccgttctccgcgtcatctgcgcgtgagcggtcagcgtcgtcgtcgttaccgtgac
gagcgttacccgacccagtcaccgatgccgctgaccgtcgcctgtgcgtcgccagaactg
gcttccggtaaagtatggattacctatccgatcgctcaggttcagaccgaagcggaagca
ccggtagagcaggacgtaacagaacagccaatcgtagcgcaagctgctgaacaggcggtc
gttgccgagccagcagttgttgaaaccgtcgttgaagcgcctgaagttgccgccccggca
gccgtcgccgaaccggttaccgtggcgcaggaaacggcgccagcgcaggaagaagctccg
gtgtcggcagtggaagaagcgcctaccgcagtggttgaagaaaccgttgcacaagaggtg
gttgtcgatgaagcaccggttgtcgctgaagaagtgaaagccgaggccgaaacgccggtt
gttgaagctgcaccagtggttgaggccgcgccggtgattgacagtgcgcctgtggcagaa
gaaccggttgttgaagaggctccggtcgaggaaacgccagtggttgccgcgccagttgtt
gctgaaccagttgtgaccgcaccggcaccggctgcgaaatcttctgataccaaccgtgcc
tcagcgccgatgacccgagcgccggcaccggcatacgtgccagaatcaccgcgccacagc
gactgggttcgtccgtcctttaacttcgacggtaaaggttccgctggcggccatagtgcg
acgcacacggctaccgctgaacctacccgcccgcagtcggttgagtaa
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