Klebsiella grimontii: JJJ10_25290
Help
Entry
JJJ10_25290 CDS
T07992
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kgr
Klebsiella grimontii
Pathway
kgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJJ10_25290 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kgr03019
]
JJJ10_25290 (rnr)
03016 Transfer RNA biogenesis [BR:
kgr03016
]
JJJ10_25290 (rnr)
Enzymes [BR:
kgr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JJJ10_25290 (rnr)
Messenger RNA biogenesis [BR:
kgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JJJ10_25290 (rnr)
Transfer RNA biogenesis [BR:
kgr03016
]
Prokaryotic type
tRNA degradation factors
JJJ10_25290 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
AlkZ-like
Motif
Other DBs
NCBI-ProteinID:
QTP39692
LinkDB
All DBs
Position
complement(5380246..5382693)
Genome browser
AA seq
815 aa
AA seq
DB search
MSQDPFLDRESEKYANPIPSREFILDHLAKREKPASRDELATELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGIVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTGQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EQIMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQVAGLKEQVPEEAKKGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDGA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAEEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMDEMLQLGAHCSMTERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTEREKAKKSAGGKSSGRRRQAGKQVNFEPDSAFRKQKGQSQPKS
AQPKGEKKAKKPSEKTQKIAAATKAKRAAKKKIAE
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctggaccgcgaatctgaaaaatacgctaatccaatcccgagc
cgggaatttatcctcgatcatttagcaaaacgcgaaaaaccggctagccgagatgagctg
gcaacagagctgaatattgaaggcgaagaacaacaagaagcattgcgccgcagattgcgc
gcaatggaacgcgatggtcagctggtctttacgcgtcgtcagtgctatgcgctgccggaa
cgtcttgacctgctgaaaggtatcgttattggccatcgcgatggctatggcttcctgcgc
gtggaaggccgtaaagatgacctgtatctgtcgtctgagcagatgaaaacctgcattcac
ggcgatcaggtgctggcgcagccgctgggcgccgaccgtaaaggccgtcgggaagcacga
attgtccgcgtactggtgccaaaaacgggccagattgtgggccgctactttaccgatgca
ggcgtcggctttgtggtaccggatgacagccgtttaagcttcgatatcctgatccccccg
gaacagattatgggcgcgcgtatgggctttgtcgtggtggttgagctgacccagcgtcca
acccgccgcactaaagcgatcggtaaaatcgttgaagtgctcggcgacaatatggggacc
ggcatggcggtcgatatggccctgcgcacccatgaaatcccctacgtctggccgccagcg
gtcgaaaaacaggtcgccggcctgaaagaacaggtaccggaagaggcgaaaaaagggcgc
gttgatttacgcagcctgccgctggtcaccattgatggcgaagacgcccgcgactttgat
gatgccgtgtactgcgagaagaaacgcggcggcggctggcgtctgtgggtggcgatcgcc
gatgtgagctactacgtgcgtccggggacgccgctggatggcgaagcgcgcagccgcggc
acctcggtctacttcccgtctcaggtggttcccatgctgcctgaagtgctctcgaacggc
ctgtgttcactgaatccccaggtcgacagactctgtatggtttgcgaaatgaccatttca
gccaaggggcgtctgaccggcttcaaattctacgaagcggtgatgagctcccacgcccgt
ctgacctataccaaagtctggcatatgctgcagggtgaccaggatctgcgcgagcagtac
gcgccactggttaagcatattgaagagctgcataacctttacaaagtgctggacggcgcg
cgcgaagagcgcggcggtatctcatttgagagtgaagaagctaaattcatcttcaatgct
gaacgccgtattgaacgcattgaacagactcagcgtaacgatgcgcacaagctgattgaa
gagtgcatgatcctggcgaacatttccgctgcgcgcttcgttgagaaggccgaggaaccg
gccctgttccgtatccatgacaaaccaagcaccgaagcgattaccgccttccgttcggtt
ctggcggagctggggcttgagctgcctggcggcaacaagccggagccgcgcgactatgcg
gaattactgacgtctatcgccgatcgtccggatgcggagatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatatacgacccggaaaatcgcggtcactttggcctggcgctg
caatcctacgcccacttcacctcgccgattcgccgctatcctgacctttctctgcatcgt
gcgatcaagtatttactggcgaaagagcagggacataaaggcaacagcaccgagaccggc
ggctggcactacagcatggatgagatgctgcagctgggggcgcactgttcgatgaccgaa
cgccgtgctgatgaagcgacgcgcgatgtttcggattggctgaagtgtgatttcatgttg
gatcaggtcggtaacgtctttaagggcgtgattgccagcgtgaccggctttgggttcttc
gtccgtctggatgagctgtttattgacggtctggtgcacgtctcttccctcgataacgac
tactaccgcttcgatcaggtagggcagcgtctgatcggtgaatccggcggtcagacctat
cgtctgggcgatcgtgtagaagtgcgcgttgaagcggtcaacatggacgagcgtaaaatt
gatttctcgcttatctccagcgaacgcgcgccgcgcaacgtcggtaaaaccgagcgtgaa
aaggcgaagaaaagcgccggaggtaaatcgtccgggcgccgccgccaggcgggcaagcag
gtgaacttcgagccagatagcgcattccgcaagcagaaaggccaatctcagccgaagtcc
gctcagccaaaaggcgagaagaaagcgaagaagccgtcggagaaaacccagaagatcgcc
gcagcgaccaaggccaagcgtgcggcgaaaaagaaaatagctgagtaa
DBGET
integrated database retrieval system
