Kerstersia gyiorum: EHF36_00550
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Entry
EHF36_00550 CDS
T05924
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
kgy
Kerstersia gyiorum
Pathway
kgy02020
Two-component system
kgy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kgy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EHF36_00550 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EHF36_00550 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kgy03021
]
EHF36_00550 (rpoN)
Transcription machinery [BR:
kgy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EHF36_00550 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_3
HTH_23
HTH_IclR
HTH_5
Motif
Other DBs
NCBI-ProteinID:
QBR39288
LinkDB
All DBs
Position
146466..147851
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AA seq
461 aa
AA seq
DB search
MIRPALEIRQSQQLVLTPQLQQALRLLQLSSLDLQQEISQALTENPVLELESPEPAAESV
AAEDLFSGGGGPRQDGDDDFFPEAAATPSLREHLLGQISCTRASRRDLALMTVLIDELDD
NGYLAASFEEILAYLPESLEVEQGELEAALALLQNMEPAGIAARTMSECLLLQLRQPDAK
VWPEARDAAIVALARRLCERHLDALAAGRLAFLCEELKCSPAEVRTAHALIRRLDPYPGR
AWTVPVADFAVPDVIAYRSGNGWRVRLNGDLVPRLSVNDAYVQALGQEPRGSYEGLQSHV
QQARWLIRQVAQRFDTLLRVSTEIVMRQQAFFESGMVALRPMVLREIAEALGMHESTISR
ATSSKYMATPHGTLELKRFFSTGVPAADGESASAASIQAMMREMLDQEDPRKPLSDSQLM
AKLAERGVELARRTVAKYREGMRVPTASQRKAMALMRMDDC
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgatacgacccgcgctggaaattcgccaaagtcagcagttggtgctgacgccacagttg
caacaggccttgcgtctcttgcaactgtcgtcgctggacctgcaacaggaaatctcgcag
gcgctgacggaaaacccggttctggagctggaatcccccgaacccgccgctgagtcggtg
gcggccgaggatctgttttccggaggcggcggcccgcgccaggacggcgacgacgatttt
ttccccgaggctgccgccacgccgtcgctgcgcgagcacctgctggggcagatttcctgt
acccgtgccagccgtcgtgacctcgcgctgatgaccgtgctgatcgacgaattggacgat
aacggctatcttgcggccagtttcgaggaaatcctggcctatttgccggaatcgctcgag
gttgaacagggcgaactggaagcggcactggccttgctgcagaatatggagccggccggt
attgccgcccgcacgatgtccgaatgcctgctgctgcaattgcggcagccggatgccaag
gtctggcccgaggcccgcgacgctgccattgtggcgctggcgcggcgcctgtgcgagagg
catctggacgccctggcggcgggccggcttgctttcctgtgcgaggaattgaagtgttcg
ccggccgaggtgcgtaccgcgcacgccctgatccggcggttggacccttacccgggccgg
gcctggacggtgccggtggcggattttgcggttccggacgtgatcgcttaccgtagcggc
aatggctggcgtgttcgcctgaatggcgacctagtgccgcgcctgagcgtgaatgatgcc
tatgtgcaggctctggggcaggagccgcgcggcagttacgagggcctgcagtcccatgtg
cagcaggcgcgctggctgatccgacaggtagcgcagcgcttcgatacgctgctgcgcgtc
tctaccgagatcgtgatgcggcagcaggctttcttcgaatccggcatggtggcgttgcgg
ccgatggtgctgcgcgagatcgccgaggccttgggcatgcacgagtccacgatatcgcgg
gcgacctccagcaagtacatggcgacgccgcacggcacgctggagctcaagcggtttttc
agtaccggcgtgccggcagccgatggcgagtcggcttctgcggcgtcgattcaggcgatg
atgcgtgaaatgctggatcaggaagatccgcgcaagccgctgtccgatagccagctgatg
gccaagctggccgagcgcggtgtcgagctggcgcgccgcacggttgccaagtaccgggaa
ggcatgagagtgcctacggcttcgcagcgcaaggccatggccttgatgcgtatggatgat
tgttga
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