Kerstersia gyiorum: EHF36_14065
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Entry
EHF36_14065 CDS
T05924
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kgy
Kerstersia gyiorum
Pathway
kgy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EHF36_14065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kgy03400
]
EHF36_14065
Enzymes [BR:
kgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EHF36_14065
DNA repair and recombination proteins [BR:
kgy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EHF36_14065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
AAA_30
Cas3-like_C_2
ERCC3_RAD25_C
HemY_N
Motif
Other DBs
NCBI-ProteinID:
QBR41618
LinkDB
All DBs
Position
3210571..3214059
Genome browser
AA seq
1162 aa
AA seq
DB search
MPESTTTSSASLLPESPATASVLAALKPGLRHAQPRPHGSGDACWLAELSERAGQPMLIL
CAEPLQAQRLAEEIRLFAPERRVRQLPDWETLPYDGFSPHQDLISERLKTLHALMQGQVD
ILTVPVTTALYRLAPPSFLAAYTFSFRKGDKLDEAALRAQLVLANYSHVTQVSAPGEFSL
RGGIIDLFPMGSAVPYRIDLFDDEIESLRSFDVDTQRTLYPVREIELLPGREFPLDENAR
TRFRARFREEFEGDPSRALPYRDIGNGIAFAGVEYYLPLFFDETATLFDYLPAGTLAVTH
GDIDNTIQGFARDTQSRYQFLKSDRERPLLPPDRLFMNQEVLFGHLRQLPRLALTDTPNP
DFTAPPDVAIARRAEDPLARLRLCIHGLKDVSDSAARRVVLCADSAGRRETLLLMLQEHG
LAPHEQADSLPAARVADGRFILATAPLTAGFIRHADGTVFLTENDLYPDSGGSLRRPRRA
QEQASNVEAMVRDLAELREGDPVVHLQHGIARYRGLASMDLGEGQMEFLHLEYAQGSTLY
VPVSQLHLIARYSGADPESAPLHQLGSGQWEKARRKAAKQVRDSAAELLDLYARRAARQG
YAFELSPSDYGTFAQGFGFDETPDQAAAIEAVIDDMTSGRPMDRLVCGDVGFGKTEVALR
AAFIAVANGKQVALLCPTTLLAEQHAQTFSDRFAEWPVKVVELSRFRSAKEITSAIGGIN
DGTIDIVIGTHKILSKDVRFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIP
RTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQAYFLHNEVE
TIHNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSA
NTIIIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELG
SGFYLAMHDLEIRGAGEVLGESQSGNIQEIGFSLYSDMLNAAVRALKSGKEPDLDADLHA
GCEINLHAPALLPSDYCPDVHARLALYKRLSHAPDDDTLLGLQEELIDRFGPLPEAAKTL
LASHRLRLRAEALGIQKIDASETQALLHFRTDTRVDPVRLIELVQKQRHIRLSGPDKLRM
EISKPDIAARIDAVRGLLRALG
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaatccaccaccacttccagcgcctcgctgctgcccgaatcgccggccaccgcc
agcgtccttgccgccctgaaacccggcctgcgccatgcccagccgcgcccgcacggctcc
ggcgatgcctgctggctggcggaactctcggagcgcgccggccagcccatgctgatcctg
tgcgccgagcccctgcaagcccagcgcctggccgaggaaatccgcctgttcgcgccggaa
cgccgggtgcgccagctgccggattgggaaaccctgccctacgatggattctcgccgcac
caggatctcatttccgagcgtctcaaaacgctgcatgcgctgatgcagggccaggtagac
attcttaccgtccctgtcaccaccgcgctgtaccggcttgcgccaccctcgttcctggcg
gcctataccttttccttccgcaagggcgacaagctcgatgaggccgcgctgcgcgcccag
ctggtcctggccaactacagccatgtcacgcaggtcagcgcgccgggggaattcagcctg
cgcggcggcatcatcgacctctttcccatggggtcggcggtgccctaccgcattgacctg
ttcgacgatgaaatcgaatcgctgcgcagcttcgatgtcgatacacaacgcacactctac
cccgtgcgcgagatcgaactgctgccgggccgcgagtttccgctggacgaaaacgcacgc
acgcgctttcgcgcacgctttcgcgaagagttcgaaggcgaccccagccgcgcactgccc
taccgcgatatcggcaacggcatcgcctttgccggcgtcgaatactacctgccgctgttc
ttcgacgaaaccgccacgctgttcgactacctgcctgccggtacgctggcggtcacgcac
ggcgatatcgacaacaccatccagggcttcgcccgcgacacccagagccgctaccaattc
ctgaaaagcgatcgcgagcggccgctgctgccgcccgaccgccttttcatgaaccaggaa
gtcctgttcggccatctgcgccagctgccgcgcctggcgctgaccgatacccccaatccg
gacttcaccgcgccacccgatgtcgccattgcgcgccgcgccgaagacccgctggcgcgc
ctgcgcctgtgcatccacggcctgaaggacgtcagcgacagcgcagcccggcgcgtcgtc
ctgtgcgccgattccgccggccgccgcgaaactctgctgctcatgctgcaggagcacggc
ctggcgccgcacgaacaggccgacagcctgcctgccgccagggttgcggacggccggttc
atactggcgacagcaccgctgacggcaggcttcatccggcatgccgacggcacggtcttc
ctgaccgaaaacgatctctacccggatagcggcggcagcctgcgccggccgcgccgtgcc
caggaacaggccagcaacgtcgaggccatggtacgcgacctggccgagctgcgcgaaggc
gaccctgtggtacacctgcagcacggcattgcacgctaccgcggactggccagcatggac
ctgggcgaaggccagatggaattcctgcatctggaatacgcgcagggcagcacgctgtat
gtaccggtgtcgcagttgcatctgatcgcccgctacagcggcgccgacccggaatccgcg
ccgctgcaccaactgggctcgggccaatgggaaaaagcccggcgcaaggcggccaagcag
gtgcgcgacagcgccgccgaactcctggacctttatgcgcggcgcgctgcccgccagggt
tacgccttcgagctgtctccgtccgactacggcaccttcgcccagggtttcggtttcgac
gaaaccccggaccaggccgccgccatcgaagccgtcatcgacgacatgacttccggccgg
ccgatggaccgcctggtgtgcggcgatgtcggcttcggcaagaccgaagtcgccctgcgc
gctgcattcatcgccgtggcaaatggcaagcaggtcgccctgctgtgcccgaccacactg
ctggcggaacaacatgcccagaccttctccgaccgcttcgcggaatggccggtcaaggtc
gtggaactgtcgcgctttcgctccgccaaggaaatcaccagcgccatcggcggcatcaac
gacggcaccatagatatcgtcatcggcacccacaagatcctgtccaaggatgtgcgtttc
aaacgcctgggcctggtgatcatcgacgaagagcaccgtttcggcgtgcgccagaaagaa
gcgctcaaggcactgcgcgcggaagtggatgtcctcaccctcaccgcaacgcctatcccg
cgcacgctgggcatgtcgctcgaaggcatacgcgacttctctgtcatcgccaccgcaccg
cagaagcgcctggcgatcaagaccttcgtgcgccgcgaggacggcagcaccatccgcgaa
gcgctgctgcgcgaactcaagcgtggcggtcaggcctatttcctgcacaacgaagtggaa
accatacacaaccgccgtgcacggcttgaagaactggttcccgaggcccgcatcgccgtg
gcgcacggacagatgcccgagcgcgaactggaacaggtcatgaagggcttctaccagcag
cgctacaacgtgctgctgtgcacgaccatcatcgaaaccgggatcgacgttcccagcgcc
aacaccatcatcatccaccgcgccgaccgcttcggcctggcccagctgcaccagttgcgc
ggccgcgtcggccgctcgcaccaccaggcctacgcctacctgctgaccccgggcgaggac
gccatcaccagcaatgccaagaagcgcctggaagcgatccaggccatggaagagttgggt
tccggcttctacctggccatgcatgacctggaaatccgtggcgccggcgaagtcctgggc
gaatcgcaatcgggcaatatccaggagattggcttctccttgtattcggacatgctcaac
gccgccgtgcgcgcgctgaaatccggcaaggaacccgacctggatgccgacctgcacgcc
ggttgcgaaatcaacctgcatgcgccggcgctgctgccttccgattactgccccgacgtg
cacgcccgcctggcgctctacaagcgcctgtcgcacgcgcctgacgacgacaccctgctg
ggccttcaggaagagctgatcgaccgcttcggcccgttgccggaagccgccaagacgctg
ctcgccagccaccgactgcgcctgcgcgccgaagccctgggcatccagaagatagacgcc
agcgaaacgcaggcattgctgcatttccgcaccgatacccgggtcgatccggtacgcctg
atcgaactggttcagaagcagcgccacatccgcctgagcggcccggacaagctgcgcatg
gagatatccaagcccgacattgccgcgcgcatcgacgccgtacgtggcctgctgcgcgcg
ctgggttga
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