Novacetimonas hansenii: IFJ82_07310
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Entry
IFJ82_07310 CDS
T06979
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kha
Novacetimonas hansenii
Pathway
kha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IFJ82_07310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kha03019
]
IFJ82_07310
Enzymes [BR:
kha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IFJ82_07310
Messenger RNA biogenesis [BR:
kha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IFJ82_07310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
YbbR
AAA_22
Utp25_C
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QOF96351
LinkDB
All DBs
Position
1657525..1658811
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AA seq
428 aa
AA seq
DB search
MTTFADLHLAEPLLRALNEEGYTTPTPIQAGAIPYLLQGRDLLGLAQTGTGKTAAFALPI
LNHLLTSKGRAHPKGARALVLAPTRELASQIADSFASYARHMKFTHAVVFGGVGQGRQIE
ALRRGVDVLVAAPGRLLDLMGQGHVDLAGLEILVLDEADRMLDMGFVRDIRKIVATLPTD
RQTLLFSATMPKSISELAHGLLRDPATVQVTPPSSTVDRIRQAVMYVDTGNKREALKLLV
DSPKVERAVVFTLMKHEANKVAAFLNEHGITAEAIHGNKSQGARERAMSGFRSGAVKVLV
ATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLRDI
EKTIGKKIPVVLEHPYHSEAAANSTMRPPVLGGGGRGRGGRSGGGGGNGRGGRPGGHGGP
RSGGRRVA
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgttcgccgatcttcatcttgcggagccgctgctgcgtgccctcaacgaggaa
ggctataccacgcccaccccgattcaggctggtgcaatcccctatctgcttcaggggcgt
gacctgctcgggctggcgcagaccggcactggcaagacggcggccttcgcgctgccgatc
ctcaatcacctgctgaccagcaagggccgcgcccaccccaagggggcgcgtgcgctggtg
cttgcgccgacgcgcgaactggcgtcacagatcgcggacagctttgcttcgtatgcgcgg
cacatgaagttcacccatgccgtggtcttcggtggcgtgggacagggacgacagatcgag
gccctgcgtcgcggcgttgatgtgctggttgcagctccgggccgtctgcttgacctgatg
ggacaggggcatgtcgatcttgccgggcttgagattcttgtccttgacgaggctgaccgg
atgctcgacatgggctttgtccgcgatattcgcaagattgtcgccaccctgccgaccgat
cgccagaccctgctgttttccgcgacgatgcccaagagcatctccgaactggcgcatggc
ctgttgcgtgatcccgccacggtacaggtgacaccgccgtccagcacggtggaccgtatc
cgtcaggctgtcatgtatgtggacacgggcaacaagcgcgaggcgctgaagctgctggtg
gactcgcccaaggttgaacgcgctgtcgtattcaccctgatgaagcatgaggccaacaag
gttgccgcgttcctgaatgaacatggcatcacggcggaggccatccacggcaacaagtct
cagggtgcgcgtgaacgtgcgatgtcgggtttccgttccggcgcggtgaaggtgctggtt
gccaccgatatcgccgcacgtggcattgatgtcgatgacgtaacgcatgtctttaattat
gacctgccgaatgttcccgaaagctatgtgcaccgcattggtcgcaccgcgcgtgcgggg
cgtgatggctgggccgtttcgctgtgcgatgcagaacagcgtgcatggttgcgcgatatt
gaaaagacgatcggtaagaagattccggtcgtgttggaacatccctatcattccgaggcg
gcggctaattccacgatgcgtcctccggtgctgggcggtggtggtcgcgggcgtggcggt
cgctcgggcggtggcggcggcaatggtcgcggcggtcgtcccggtggtcatggtggtcca
cgcagcggggggcgtcgcgtcgcctga
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