Kaistella haifensis: EG338_02475
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Entry
EG338_02475 CDS
T07805
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
khi
Kaistella haifensis
Pathway
khi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
khi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EG338_02475 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
khi03400
]
EG338_02475 (mfd)
Enzymes [BR:
khi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EG338_02475 (mfd)
DNA repair and recombination proteins [BR:
khi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EG338_02475 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
FF
KH_PARP14_5
DUF5691
Motif
Other DBs
NCBI-ProteinID:
AZB21075
LinkDB
All DBs
Position
complement(484355..487738)
Genome browser
AA seq
1127 aa
AA seq
DB search
MQLKSINETFLPDMLRNEFGKEIFDNLDQYSHISVKGFAGSAPSVFTAELFLSQQKTILF
LIEDKEEALYITAEMEDLLGKENVLYFPATHLEPYQIEKTQNANLVLRTEVLNKLNSGKK
PKVIVAGFSALVEKVLKKEDFKAISHQIKVGESLDFDFTEELLHQFGFTLTDFVSEPGEF
SVRGGIVDVFSYSNEEPYRITFFGNEIESIKTFNIETQLSNGKINEFQLVSNMNFAVSGS
KVSFFELLPKDSLVVSKNAFLGFRKTKDFYEKACEKFETLSKEISHRKPEELFVSEEVLM
ADYQKFKSIDFTISALKFDGLNVQEVELNQTQQPTFNKNFEFLIDDLNEKKDAGFDVWIS
FSTEKQKERLKVIFEEIGAVGEDQKIPFKSFKSELHEGFVDVDHRISVYTDHQIFDRYQR
FKAKNTFAKSEQLTLKDLMQMKVGDFITHIDHGIGKFMGLVKVNNNGKVQECFKLVYKNG
DLLYVSIHSLHKISKYNGPDGREIVLSKLGSPAWKNLKQKTKAKVKQIAFDLIKLYAQRK
TAKGFAFAPDSYLQNELEASFLYEDTPDQEKATLDVKKDMENDTVMDRLICGDVGFGKTE
IAVRAAFKAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVNISYLNRFRTAKQKNETL
KGLEEGKIDIVIGTHQLVGNSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNIDTLTLTA
TPIPRTLQFSLMAARDLSVIKTPPPNRQPVDTSIIGFNEEIIRDAVSYEIQRDGQVYFIN
NRIENLKDIAGLIQRLVPDARVITGHGQMEGKQLERNVLDFMEGKYDVLVSTTIVESGVD
VPNANTIFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAIEQF
SDLGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGFDTYQKIMQEALEELQNDEEFSNLF
DNEEDRKKLFKSTKEVNIDTDLELMLPDFYVQSIEERLSLYQKLAEIQSKEDLKKFENEL
EDRFGKLPTEAQNLLKSVELKWIAAEIGFDKIVVKNGIFLGYFPPNPQDKFYQSDKFKHL
ISYLSQNPKEATLKEKHSAEGSQLMMRKENVQHVDEVNAVLERILAK
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaagtccatcaatgagacatttcttcccgatatgttgcgcaacgaattcggt
aaagaaatcttcgataatctcgatcaatattcgcatatttctgtgaaaggttttgcagga
tctgcaccttccgtttttactgccgaattgtttctgtctcagcaaaagacgattcttttc
ctaattgaagacaaggaagaggcgctctatattaccgcagaaatggaggatttgctggga
aaagaaaacgtgctgtattttccggcaactcatctggagccttatcaaatcgagaaaact
caaaacgcaaatcttgtcctaaggactgaagttctaaataaattaaactccggaaaaaaa
cctaaagtcatcgttgcaggattttcggctttggtggaaaaagtattgaaaaaggaagat
tttaaagcaatttctcatcagataaaagtcggcgaaagtctggatttcgatttcaccgaa
gagcttttacaccagttcggatttactttgacggattttgtttccgagccgggcgaattc
tcggttcgaggcggaattgttgatgttttttcgtattccaatgaagagccttatcggatt
acatttttcggaaatgaaattgaaagcattaaaacttttaatatcgaaacgcaactttcc
aatggaaaaataaacgaatttcagttggtttcaaatatgaattttgcggtttcgggtagc
aaggtttctttcttcgaattgttgccaaaagacagtttggtggtttccaaaaacgcattt
ctcggatttcggaaaacgaaagatttttatgaaaaagcctgtgaaaaatttgaaacatta
agcaaagaaatcagtcatagaaaaccggaagaattgtttgtttcggaagaagttttgatg
gcggattaccaaaaattcaaaagcattgattttaccattagtgcattgaaatttgatggc
ttaaatgttcaggaagtagaactcaaccaaacgcaacagccaactttcaataaaaatttc
gaatttttgattgacgatttaaatgagaaaaaagatgccggttttgatgtatggatttca
ttttccaccgagaagcagaaagagcgtttaaaagtaatctttgaagaaatcggagctgtt
ggcgaggatcaaaaaatccctttcaaatccttcaaatccgaacttcatgagggttttgta
gatgtagatcatcgcatttcggtgtacaccgatcatcagattttcgaccgttaccaaaga
tttaaagcgaaaaatacctttgcaaaatccgaacaacttacgctgaaagatttaatgcag
atgaaagttggcgatttcattactcacatcgatcacggcatcggaaaattcatgggtttg
gtgaaagtgaacaacaacggaaaagttcaggaatgtttcaaattggtttacaaaaacggt
gatttgctgtatgtttcgattcattcccttcataaaatttccaaatacaacggccccgac
ggacgcgaaattgtactcagtaaactcggttctccggcttggaaaaatttaaaacaaaaa
accaaagcgaaggttaagcaaattgcttttgacctcatcaagctttatgcacaaagaaaa
acggcgaaaggttttgcctttgctcccgattcttatcttcaaaatgagttggaagcgagt
tttctttacgaagatactccggatcaggaaaaagcgacgttggacgtaaaaaaagacatg
gaaaacgataccgtgatggatcgtttgatttgtggagatgtaggtttcgggaaaacggaa
atcgcggtgagagccgctttcaaagcagcgacagacggtaagcaagttgcgattttggtt
ccgaccacaattttggcttttcagcattaccgaagttttaaggaacgtttgaaagatttc
ccggtgaatatctcttatttgaatcgttttcgaacagccaaacagaaaaacgaaaccttg
aaaggccttgaagaagggaaaatcgacattgtcatcggaacgcatcagttggttggaaat
agtgtgaaatttaaagatctcggacttttaatcatcgatgaagagcataaattcggagtt
tccgtaaaagacaaactcaaaactttaaaaaataatattgatacattaacccttactgca
acgccgattccgcgaactttacaattctcattaatggctgcaagagatttatcggtgatc
aaaacgccaccgccaaacaggcaacccgttgatacgagtattatcggttttaatgaggaa
attatcagagatgcagtttcttatgaaattcagcgcgacggacaggtttatttcatcaat
aatcgaattgaaaacctgaaagatatcgctggtttgatccaaagattggttcctgatgca
agagtaattaccggtcacggacaaatggaagggaagcaattggaacgaaatgtcctcgat
tttatggaaggcaaatacgatgttttggtttcgacaacgattgtggaaagtggagtagat
gttccgaatgcgaataccattttcattaatgatgcacaacgtttcgggatggcggatctg
caccaaatgcgcggtagagttgggcgtagtaataggaaagcgttttgttatttgattacg
ccaccttttgatatgatgacgtcggatgcgagaaaaagattggaagcaattgagcaattt
tcagatttgggaagcggtttccagattgcgatgaaggacttggaaatccgtggagcaggc
gatttgttgggtggcgaacaaagtggtttcatcaacgaaatgggatttgatacttaccaa
aaaatcatgcaggaagcgttggaagaacttcagaatgatgaggaattcagcaatttgttt
gataatgaagaagaccgcaaaaaactctttaaatcgacaaaagaagtgaatattgatacc
gatctggaattgatgttgccggatttttatgttcaaagtattgaagaaagactttcgctt
taccaaaaattggcagaaattcaaagtaaagaagatctgaagaagtttgaaaatgaatta
gaagaccgtttcggaaaacttccgactgaagcgcaaaatctattgaaaagtgtagaatta
aaatggattgccgcagaaattggattcgataaaattgtggtgaaaaacgggattttcctt
gggtatttcccgccaaatccgcaggataaattctaccaaagcgataagtttaaacatctt
atttcttatttaagccagaatccgaaagaggctactttgaaagaaaaacattccgcggaa
ggcagccaactgatgatgagaaaagaaaatgtacaacatgtagatgaagtgaatgcagtt
ttggagcgaattttagccaagtaa
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