Kaistella haifensis: EG338_08035
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Entry
EG338_08035 CDS
T07805
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
khi
Kaistella haifensis
Pathway
khi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
khi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG338_08035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
khi03019
]
EG338_08035
Enzymes [BR:
khi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG338_08035
Messenger RNA biogenesis [BR:
khi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG338_08035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Cas3-like_C_2
Flavi_DEAD
AAA_22
HEM4
UvrD-helicase
P-loop_SecA
NAT10_TcmA_helicase
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AZB22016
LinkDB
All DBs
Position
complement(1690299..1691552)
Genome browser
AA seq
417 aa
AA seq
DB search
MKFTDLKLIDPIAKALQEEGYTQPTPIQEQAIPSILEGKDLLGTAQTGTGKTAAFAIPIL
QNLTQKNIRNNQIKALILTPTRELAIQIEESFNAYGRHLKMRNLVVFGGVKQGAQEAALK
KGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIVKLLPQKRQT
LFFSATFPDEIKTLANSMLSNPVKVSVAPVSATADTIQQKVYFVEKDNKLDLLTHILKQD
ISDSVLVFSRTKHGADKIARKLQSHKISAEAIHGNKSQNQRQNALTNFKSGKTRILVATD
IAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGAEGKSISFVDGLDLVNLKNTEKL
IGKKIPVETDHPFHTDNLVPQKRDSNNKPFSPRPKPQSKENIGFKKPKNKSNFSRNK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaccgacttaaaactcatcgatcctatcgctaaagcgttacaggaagaaggt
tacacccaaccaaccccaattcaggaacaagccattccaagtattctagaaggcaaagac
ctcctcggaaccgcacaaacaggaaccggaaaaacagcagcttttgcgattccgattctg
cagaatttaactcagaaaaacatccgaaataaccaaatcaaagctttgattctgactcca
accagagagttggccattcaaatcgaagaaagtttcaacgcttacggaagacatttaaag
atgagaaatcttgtagttttcggtggcgtaaaacaaggcgcacaggaagccgctcttaaa
aaaggagtggatattttggtagcaacaccgggaagacttttagattttattgctcaagga
atcatctctttgaaaaatcttgaaatcttcgttttagacgaagccgaccgaatgctcgac
atgggttttgtacacgatgtaaaaagaattgtgaaacttttaccccaaaaaagacagact
ttgtttttttcggcaacattcccggatgagattaaaacattggcaaattccatgcttagt
aatcctgtgaaagtatcagtagcaccggtttccgcaactgcagatactattcagcagaaa
gtttattttgttgaaaaagacaacaaactggatttgcttacccacattcttaagcaagat
atttccgattcggttttggtattttccagaaccaaacacggcgctgataaaatcgctaga
aaattgcagtctcacaagatttctgcagaagcaattcacggaaataaatcgcaaaaccaa
agacaaaacgcactcaccaatttcaaatccggaaaaaccagaattttggttgctaccgat
atcgcagcaagaggaattgatattgatgaactgaaatatgtcgtaaatttcgaactttct
gatgtctccgaaacttatgttcaccgaatcggaagaactggaagagccggcgcagaagga
aaatcgatctcgtttgtggatggattagatttggtaaatctaaaaaatacagaaaaactt
attggcaagaaaatccctgtagaaaccgatcatccgtttcataccgacaatctggttccg
caaaaaagagattcgaacaacaaaccattttctccgcgaccaaaaccacaaagcaaagaa
aatatcggtttcaaaaaaccgaaaaataaaagtaatttttcgcgaaataaataa
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