Roseateles sp. DAIF2: G8A07_00125
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Entry
G8A07_00125 CDS
T06904
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
kia
Roseateles sp. DAIF2
Brite
KEGG Orthology (KO) [BR:
kia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kia03016
]
G8A07_00125
Enzymes [BR:
kia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
G8A07_00125
Transfer RNA biogenesis [BR:
kia03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
G8A07_00125
Prokaryotic type
tRNA splicing ligases
G8A07_00125
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6511
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QPF71482
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All DBs
Position
complement(31338..32588)
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AA seq
416 aa
AA seq
DB search
MEKNNNNIPEAAAAGFEQLDVGGGVPVKMWTRGVPVEEAAKRQLENAARLPIVFRHIAAM
PDVHLGIGATVGSVIPTLRAIIPAAVGVDIGCGMMAAKTTLRAEDLPDNLAPLRSAIERA
VPHGRAPGARDPGAWHKTPGSVNTAWAQLEPEFTELCRDYPKLAKTNHLNHLGTLGSGNH
FIEVCLDEAGAVWFMLHSGSRGVGNAIGTMFIELAKQDALRNNANLPDRDLAYFEEGARY
FGDYVRAVGWAQKFAALNRELMMRRVIEAAKTVIRKNFQSHIEAVNCHHNYVQKERHFGE
EVYVTRKGAVSAKAGQLGIIPGSMGARSYIVRGKGQAESFESCSHGAGRTMSRGDAKRRF
TLAEHRAATEGVECRKDKDVLDETPAAYKDIDAVMAAQRDLVEVVHTLKQVVCVKG
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaacaacaacaacatccccgaagcagcagccgccggcttcgagcagctggac
gtgggcggcggcgtgccggtcaagatgtggacccgcggcgtgccggtggaggaggcggcc
aagcgccagctggagaacgccgcgcgcctgcccatcgtcttccgccatatcgccgcgatg
ccggacgtgcacctgggcatcggtgccaccgtcggctcggtgatcccgaccctgcgcgcg
atcatcccggcggcggtcggcgtcgacatcggctgcggcatgatggccgcgaagaccacc
ctgcgtgccgaggacctgccggacaacctggcgccgctgcgcagcgcgatcgaacgcgcg
gtgccgcatggccgcgcgccgggcgcgcgcgatccgggcgcctggcacaagacgccgggt
tcggtgaataccgcctgggcgcagctggagccggagttcaccgagctctgccgcgactat
cccaagctggccaagacgaatcatctgaaccatctgggcacgctcggctcgggcaaccat
ttcatcgaggtctgcctcgacgaggccggtgcggtctggttcatgctgcactcgggctcg
cgcggcgtcggcaacgcgatcggcacgatgttcatcgagctggccaagcaggacgcgctg
cgcaacaacgccaacctgccggaccgcgacctggcttacttcgaggagggcgcgcgctac
ttcggcgactatgtgcgcgcggtgggctgggcgcagaagttcgcggcgctgaaccgcgag
ctgatgatgcgccgcgtgatcgaggccgcgaagacggtgatccgcaagaacttccagagc
catatcgaggcggtcaactgccaccacaactatgtgcagaaggagcgccatttcggcgag
gaggtctatgtcacccgcaagggcgcggtcagcgccaaggccggccagctgggcatcatc
cccggcagcatgggcgcgcgcagctatatcgtgcgcggcaagggccaggccgagagcttc
gaaagctgctcgcatggcgccggccgcaccatgagccgcggcgatgccaagcgccgcttc
accctggccgagcaccgcgccgccaccgagggcgtcgaatgccgcaaggacaaggatgtg
ctcgacgagacgcccgcggcctacaaggacatcgacgcggtcatggccgcgcagcgcgac
ctggtcgaggtggtgcacacgctgaagcaggtggtgtgcgtgaagggctga
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