Roseateles sp. DAIF2: G8A07_07375
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Entry
G8A07_07375 CDS
T06904
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kia
Roseateles sp. DAIF2
Pathway
kia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G8A07_07375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kia03019
]
G8A07_07375
03009 Ribosome biogenesis [BR:
kia03009
]
G8A07_07375
Enzymes [BR:
kia01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G8A07_07375
Messenger RNA biogenesis [BR:
kia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G8A07_07375
Ribosome biogenesis [BR:
kia03009
]
Prokaryotic type
rRNA processing factors
G8A07_07375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QPF72771
UniProt:
A0A7S9GH02
LinkDB
All DBs
Position
complement(1577957..1580878)
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AA seq
973 aa
AA seq
DB search
MKRMLINATQQEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFREGTDVRSAKIQDAIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRIEGEDREELKENLDQLEYPKGMSLIARTAGIGRSAAELQ
WDLNYMLKLWTAIDDAAKGGKGAYLIYQESSLVIRAIRDYFTADVGEILIDTDDLFEQAH
QFMNHVMPDQGHRVKRYRDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVSV
DVNSARATRGGDIEETATRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRRDVEQR
LRDALRQDRARVQFSSISKFGLLELSRQRLRPALSEGSHITCPRCNGTGHIRDTESSALQ
ILRMVQEESMKDNTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRVTVLLVPNKHLETPN
YKLERLRHDDPRLENLQASYTMIEEATDEVGITRRDAGDKKNKQEPVIKGILPEQPAPIA
PPKPEPVAKAAAPAAPAAPAPAVGGGFFGWIKNLFGAAPAPAPVVEAKPTEGTGTERSGK
DGSGKRGDGRRGEGRGNRRDGERSERGGERKREGGANKPQQEARQERGDRGGERGERGER
GNRRQDRADKPEAQDPQRGEQRQERGERGERGGERRPRGEQRSKEQRVPADDQQQQLNTA
ALDLNAAAAAHDAPPAFVDSQAEGQEAEGSSEERQGRRRRRRGGRDRAGAEGAEQTGNQG
ELAIGEGQAAPAPEAAADEAATEGEDGVARAEGDDAGEGHGRDGRRRRSRDRYRRERRED
QVQDGAAEGNGEAAAAAEPAEVIAAAPAAVAAAAETAPAPVVAAPAPVAPPAAVVPAFVL
PLGELQAVAEGAGLQWVNSDADKIRVTQEAMAAEPKPVHVPRERPPVVVLDEGPLVLVET
RKDLSQIKLPFES
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaatgcgacgcagcaggaagagcgtcgcctggccatcgtcgat
ggccagaagctgctggacttcgagaccgagatcgaaggccgcgaacagcgcaagggcaat
atctacaaggccgtcgtgacccgcgtcgagccttcgctggaggcctgcttcgtcgactac
ggcgaggaccgccacggcttcctgcccttcaaggaaatctcgcgccagtacttccgcgag
ggcaccgatgtgcgctcggccaagatccaggacgcgatcaaggaaggccaggaactgctg
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccaccttcgtctcg
ctggccggccgctacctggtgctgatgcccaacaacccgcgcggcggcggcgtcagccgt
cgcatcgagggcgaggaccgcgaggagctgaaggaaaacctcgaccagctcgagtacccg
aagggcatgagcctgatcgcccgcaccgccggcatcggccgttccgccgccgagctgcag
tgggacctgaactacatgctcaagctctggaccgcgatcgacgacgcggccaagggcggc
aagggcgcctacctgatctaccaggaatccagcctggtgatccgcgcgatccgcgactac
ttcaccgccgatgtcggcgagatcctgatcgacaccgatgacctgttcgagcaggcgcat
cagttcatgaaccacgtgatgcccgaccagggccatcgcgtgaagcgctaccgcgacgac
gcgccgctgttcagccgcttccagatcgagcaccagatcgagacggccttcagccgcacc
gtgaacctgccgtccggcggcgccatcgtgatcgaccacaccgaggccctggtctcggtg
gacgtcaactcggcgcgcgccacccgcggtggcgacatcgaggaaaccgccacccgcacc
aatctggaagccgccgacgagatcgcgcgccagatgcgactgcgcgacctgggcggcctg
atcgtggtcgacttcatcgacatggaagagtcgaagaaccgccgcgacgtcgagcagcgc
ctgcgcgacgccctgcgccaggaccgcgcccgcgtgcagttcagctcgatcagcaagttc
ggcctgctggaactcagccgccagcgcctgcgcccggcgctgagcgagggcagccacatc
acctgcccgcgctgcaatggcaccggccatatccgcgacaccgaatcctcggcgctgcag
atcctgcgcatggtccaggaagagtccatgaaggacaacaccgccgccgtgcatgtgcag
gtgccggtggaggtcaccagtttcctcctgaacgagaagcgcaccgagatcaccaagatc
gagctgaagcagcgcgtcaccgtgctgctggtgcccaacaagcatctcgagacgcccaac
tacaagctggagcgcctgcgccacgacgatccgcgcctggagaacctgcaggccagctac
acgatgatcgaagaggcgaccgacgaggtgggcatcacccgtcgcgatgccggcgacaag
aagaacaagcaggaaccggtgatcaagggcatcctgcccgagcagccggccccgatcgcg
ccgcccaagcccgagccggtcgctaaggccgcggcccccgccgcgccggcagcgcccgcc
ccggccgtcggtggcggtttcttcggctggatcaagaacctgttcggcgccgctcccgcc
cccgccccggtcgtcgaggccaaaccgaccgagggcaccggcaccgagcgcagcggcaag
gacggcagcggcaagcgcggcgacggacgtcgcggcgaaggccgcggcaaccgccgcgat
ggcgaacgcagcgagcgcggcggtgaacgcaagcgcgaaggcggcgccaacaagccgcag
caggaagcccgccaggagcgcggcgaccgtggtggcgagcgtggtgaacgcggtgagcgt
ggcaatcgccgccaggaccgcgccgacaagccggaggcgcaggacccccagcgcggtgag
cagcgccaggagcgcggcgaacgtggcgagcgtggcggtgaacgccgtccgcgcggcgag
cagcgcagcaaggaacagcgtgtcccggccgacgatcagcaacaacagctgaacacggcc
gcgctggacctgaacgccgccgcggccgcacacgacgcaccgccggccttcgtcgacagc
caggccgagggccaggaggccgagggctcgagcgaggagcgccagggccgccgccgccgc
cgccgtggtggccgcgaccgcgccggtgccgaaggcgccgagcagaccggcaaccagggc
gagctggccatcggtgagggccaggccgcaccggcgcccgaagccgcggccgatgaggcc
gcgaccgagggcgaggacggcgtcgcgcgcgccgagggcgacgatgccggcgagggccat
ggccgcgacggccgccgccgccgcagccgcgatcgctatcgccgcgagcgccgcgaggat
caggtgcaggatggcgccgccgaaggcaatggcgaggccgcggccgcggccgagccggcc
gaagtgatcgctgcagcccccgccgctgtcgctgctgccgccgaaaccgcgccggcaccg
gtcgtggccgcaccggcccccgtggctcccccggccgccgtcgtgccggccttcgtgctg
ccgctgggcgagctgcaggccgtggccgagggtgcgggcctgcaatgggtcaactccgac
gccgacaagatccgcgtcacgcaggaggcgatggccgccgaacccaagccggtccatgtg
ccgcgcgagcgtccgccggtggtggtgctcgacgagggcccgctggtgctggtcgagacc
cgcaaggacctctcgcaaatcaagctgcccttcgagagctga
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