Kineothrix sp. MB12-C1: RBB56_00965
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Entry
RBB56_00965 CDS
T09298
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kib
Kineothrix sp. MB12-C1
Pathway
kib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBB56_00965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kib03019
]
RBB56_00965
03009 Ribosome biogenesis [BR:
kib03009
]
RBB56_00965
Enzymes [BR:
kib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBB56_00965
Messenger RNA biogenesis [BR:
kib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBB56_00965
Ribosome biogenesis [BR:
kib03009
]
Prokaryotic type
rRNA helicases
RBB56_00965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
Cas3-like_C_2
CMS1
Helicase_RecD
TniB
AAA_22
SNF2-rel_dom
BBL5
Motif
Other DBs
NCBI-ProteinID:
WMC92890
LinkDB
All DBs
Position
complement(188384..189982)
Genome browser
AA seq
532 aa
AA seq
DB search
MSSTENQVSYKESAIDERIIRAVEEMGFEYMTPIQEQAIPVMLMGKDIIGQAQTGTGKTA
AFGIPLIQSIDMNNKALQAIVLCPTRELAIQAAEEMRRFAKYMHGVKVLPVYGGQDISRQ
IRALSSGTQIVVGTPGRVMDHMRRHTIKTSQVKMIVLDEADEMLNMGFREDIETILKDMP
KERQTALFSATMPKPILDITREYQNADAEYVKTTPKEMTIPLIKQAYYQIQRKDKEEVLC
RLMDYYHPKRSLIFCNTKRMVDELTEHLKDRGYAAEGLHGDLSQHQRDTVMNLFRSGRTD
ILIATDVAARGIDVDDVEAVFNYDVPDDIEYYVHRIGRTGRAGRTGRSFTLVVGRESFKL
REIERICHTKIKEKTIPSAADITSVKAQKVLNEALDVMQNKKMDKTVAFLEEKLAEGEYS
ALELAAAFMKMKMGDDIKDIKIEKYSSKERGFSGRKGSGFGVRKGGDNRRRNDGRRNGEG
IKDKGFSDRRRSDKGNSKKPLDQKGDKVKRNRKDRETPEIFKGREKSRREAI
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtacagaaaatcaagttagttataaggaatcggcaattgatgaaagaatcatc
cgtgcggtagaagaaatgggatttgaatatatgacgcctatccaggaacaggcaatcccc
gttatgttaatgggcaaggatatcattggccaggcacagacaggaactggtaaaacggca
gctttcggaattcccttaattcaaagcattgatatgaataataaagcattacaggcaatt
gtactttgtcccacacgtgaacttgcaatccaggcagcggaggaaatgagacgttttgct
aagtatatgcatggagtgaaggtacttcccgtatacggaggacaggatatttccagacag
atcagagctcttagcagtggaactcagattgtagtaggaacacccggaagagtgatggat
catatgcgacgtcacacgattaagacgagtcaggtaaagatgattgttcttgatgaggca
gatgaaatgttgaacatgggattccgtgaggatatcgagacgattctcaaggatatgcct
aaggagcgtcagaccgctcttttctctgcgaccatgccaaagcctattctcgatattacg
agagaatatcagaatgcggatgcagaatatgtgaagacaacaccgaaggaaatgaccatt
cctcttatcaaacaggcatattatcaaatacagcgtaaagataaagaagaagtactttgc
cgccttatggattattatcatccgaagcgctctcttattttctgtaatacgaaacgaatg
gtagatgaattaacagagcatttgaaagatagaggctatgcagcagaaggacttcacgga
gatttaagccaacaccagcgagatactgtaatgaatcttttcagaagcggcagaactgat
atcttaatagctacagacgtagcagccagaggaatcgatgtagatgatgttgaggctgta
ttcaattacgatgtgccggatgatatcgaatactatgttcatagaatcggacgtacagga
cgtgcgggcagaacaggccgttcctttacattagttgttggcagggaatcgtttaaacta
cgtgaaatcgaaagaatatgccatactaaaattaaagaaaaaacaattccttctgcagcg
gatattacttctgtaaaagcacagaaagtgctgaatgaagcactggacgtgatgcagaat
aaaaaaatggataaaaccgtcgcatttttggaagagaaacttgctgagggcgagtatagt
gcgttagaattagcagcagcttttatgaaaatgaagatgggtgatgatattaaggatatt
aaaatcgagaaatacagctcaaaagagcgtggtttttccggcaggaaaggttctggattc
ggcgttcgcaaaggcggcgacaacagacgcaggaatgacggaagaagaaacggagaagga
atcaaagataaaggtttttctgatagacgccgctcagataagggcaacagtaaaaagcca
ctggaccaaaaaggcgataaggtaaagagaaatcgcaaggatagagagactcctgagatt
ttcaaaggaagagaaaaaagcagaagagaagctatttaa
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