Kineothrix sp. MB12-C1: RBB56_01690
Help
Entry
RBB56_01690 CDS
T09298
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
kib
Kineothrix sp. MB12-C1
Brite
KEGG Orthology (KO) [BR:
kib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kib03032
]
RBB56_01690 (topA)
03400 DNA repair and recombination proteins [BR:
kib03400
]
RBB56_01690 (topA)
Enzymes [BR:
kib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RBB56_01690 (topA)
DNA replication proteins [BR:
kib03032
]
Prokaryotic type
DNA Topoisomerases
RBB56_01690 (topA)
DNA repair and recombination proteins [BR:
kib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RBB56_01690 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_8
MTR4-like_stalk
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-ProteinID:
WMC93025
LinkDB
All DBs
Position
complement(335982..338063)
Genome browser
AA seq
693 aa
AA seq
DB search
MAKYLVIVESPAKVKTIKKFLGPNYEVAASNGHVRDMPKSQLGIDIENNYEPKYITIRGK
GDILANLRKEVKKAEKIYLATDPDREGEAISWHLTKALKLEDKKVYRITFNEITKNAVKE
SLKNARKVDMDLVDAQQARRVLDRMVGYRISPVLWAKVKRGLSAGRVQSVALRIICDRED
EINAFIPEEYWTLDALLHVQGEKKPLAAKYYGTPDGKVNISSEEQLKGIMAELEGAEYEV
AEVKKGERTKKAPLPFTTSTLQQEASKVLNFSTQKTMRLAQQLYEGIDIKGNGTVGIITY
LRTDSTRVSEEAENHAKEYIDRTYGNEYAAETAREKKATQKIQDAHEAIRPTDIARTPFE
LKESLSRDQFRLYQLIWKRFTASRMNPAKYETTSVKIDGNGHRFTVAASKILFDGFMSVY
TDDEEKVDNNTLVRGIDKETKLNFEAFDYKQHFTQPAPHYTEASLVRALEELGIGRPSTY
APTITTILARRYVVKENKNLYVTELGEVVNNMMKEAFPSIVDVNFTANMEVLLDGVEEGT
INWKIVISNFYPDLEEAVKKAEKELEHVKIADEVSDEVCELCGKQMVIKYGPHGRFLACP
GFPECRNTKPYLEKTGIDCPKCGKDIVLKKTKKGRKYYGCVDNPECDFMVWQKPSKEACP
ECGSLMLEKGNKLVCTKEECGFVKNKANNSENL
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatatttagtaattgtagaatcaccagcaaaagtgaagacgattaaaaagttt
ttaggaccgaattatgaggttgcggcgagcaatgggcatgtgcgtgatatgcctaaaagt
caacttggaattgacatagagaataattatgaaccgaaatatattacaattaggggaaaa
ggagatattcttgcaaaccttcgcaaagaagttaaaaaggctgaaaaaatctacttggca
actgaccctgaccgcgagggagaagctatttcgtggcatcttacaaaggcattaaagcta
gaggataaaaaggtttaccgtattactttcaatgaaattacaaaaaatgcggtaaaggaa
tcattaaaaaatgcacgtaaagtggacatggacctagtggatgctcaacaggcgcgaaga
gttctggatcgtatggtgggatatcgtatttctccggtgttatgggcaaaagtgaaaaga
ggattaagtgcgggacgtgtacagtcagtagctttgcgtattatttgtgatagagaggat
gaaatcaacgcgtttattcctgaggaatattggactctggatgccttgcttcacgttcag
ggagagaagaagcctttagcggctaaatattatggtactccggacgggaaagtgaatatc
tcttcagaggaacagctaaaaggtattatggctgaattggaaggtgctgaatatgaagta
gcagaagtgaaaaaaggagaaagaactaaaaaggctcctttgccttttaccacatcgacg
ctacaacaggaggctagtaaagttctcaatttttctacacagaagacgatgcgccttgca
cagcagctttatgaggggattgatattaagggcaatggtacggtcggtattatcacttat
ctccgtacggattccacgagagtatcggaggaagctgagaatcatgccaaagaatatatc
gatagaacatatggaaacgaatatgcggcggaaacagctcgcgaaaagaaggcgacccag
aagattcaggatgctcatgaagcaatccgccctacagatattgcgagaacgccttttgaa
cttaaggaatctctgtcaagagatcaattccgtttgtatcagcttatatggaagcgattt
actgcgagtaggatgaatccggcaaaatatgaaactacttcggtgaagatagacggaaat
ggacatcgattcactgtggcggcatcgaagattcttttcgatggtttcatgagcgtttat
accgatgatgaagaaaaagtggataacaatactttggtaagaggtatcgacaaagagacg
aagcttaacttcgaagcgttcgattataaacagcattttacgcaacctgctcctcattat
acggaagcctctcttgtacgtgcattagaggaacttgggattggacgccccagtacttat
gctccgaccatcactaccattcttgcaagaagatatgtagtaaaagaaaataaaaacctt
tatgtgacggagcttggagaagtagtgaacaatatgatgaaagaagcctttccgagtatt
gttgatgtgaactttacggctaatatggaggtgctgttggatggtgtggaggaaggcacg
attaattggaagattgtcatttccaatttctatcctgatttagaggaagcggtgaagaag
gcggaaaaggaattggaacatgtgaagatcgctgacgaagtatcggatgaagtgtgcgaa
ctttgcgggaaacagatggtgattaagtatgggcctcatggacgttttttagcctgtccc
ggtttcccggagtgccgaaatacgaagccctatctggagaaaaccggaattgactgtccg
aagtgcggcaaggatattgtgcttaagaagacaaaaaaagggagaaagtattatggttgc
gtagataatcctgaatgtgactttatggtgtggcaaaaaccttccaaagaggcatgtccg
gaatgtggttctcttatgttggaaaaaggaaataaacttgtatgtacgaaggaagagtgc
ggttttgtaaagaataaagcaaataattcggaaaatttatag
DBGET
integrated database retrieval system
