Kineothrix sp. MB12-C1: RBB56_04285
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Entry
RBB56_04285 CDS
T09298
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
kib
Kineothrix sp. MB12-C1
Brite
KEGG Orthology (KO) [BR:
kib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
kib03009
]
RBB56_04285 (rlmD)
Enzymes [BR:
kib01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RBB56_04285 (rlmD)
Ribosome biogenesis [BR:
kib03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RBB56_04285 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_31
Methyltransf_15
TRM5-TYW2_MTfase
MTS
Methyltransf_25
Methyltransf_ANTKMT
PrmA
Methyltransf_4
N6_N4_Mtase
RrnaAD
UPF0020
PCMT
Methyltransf_11
Ectoine_synth
Methyltransf_37
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
WMC93509
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All DBs
Position
complement(911905..913800)
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AA seq
631 aa
AA seq
DB search
MKKKMEAKRINPEMRQENRKQKSVGNKGDYKKDGYKGKSSSRGDNTTPGAGKDRFEKRAD
GKNSRQQGEKDSWGGKQEGHQNRNRDAEEGGKKRGPTNQRGRENWQNKDGNKDKVREKKW
QGERENRAGSGKQGHQGENKGKGKGQSWSSEKQRRSSFDRQDWKSENRDKDRVRDWGQRE
ERNGKDEKEKRSSAGGQNWQSNKGKNTAGKGREYAEKFADKNEQQVKNIKFETGRARMPK
NNEGFKGKRKNSRCKVSGECGGCKMIDVPYDEQLMQKEKETAALLKPFVKLEGIIGMENP
EHYRNKVSAAFTHDRKGKPLSGVYKEGTHYIIPVEECLLENKKADEIIGSIRELLPSFKI
KTYDEDTDYGLLRHVMVRVGHTSGQIMVVLVLSSPIMPSKNNFVKALLKLQPEITTIVIN
TNDRKTSMVLGDKEQVIYGKGYIEDTLNGKIFKISPKSFYQVNSVQTEKLYGKAIEYAGL
TGKETVLDAYCGIGTIGIMAADRAKQVIGVELNKDAVKDAVINAKQNQISNIQFYQKDAG
EFMTQLAEQETQIDTVFMDPPRAGSDEVFLNSLAMLKPKKIVYISCNPETLARDLEYLTK
KGYKAEKGVAVDMFPFTNHVETVCCLQRVNM
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaaaaagatggaagcgaagaggataaatccggagatgagacaggaaaacaggaag
caaaaaagtgttggaaataagggagattataagaaagacggatataaaggcaagagtagc
agccgtggcgataacacgacaccgggcgcaggaaaggatagattcgaaaagcgtgcagat
ggaaagaatagcaggcagcagggggaaaaagattcttggggtggaaagcaggaaggccat
cagaatagaaatagagatgcagaagaaggcggaaagaaaagaggtccgactaatcaaagg
ggaagagagaattggcagaataaagatggaaataaagataaggtaagagaaaagaagtgg
caaggtgagagggaaaatagagccgggtcaggaaaacagggacatcaaggtgaaaataaa
ggcaaaggaaagggacagagctggtcgagcgaaaaacaaagaagaagtagctttgatagg
caagattggaaaagtgaaaatagagataaggatagagtaagagactggggacaacgagaa
gaaagaaacggaaaagacgaaaaagaaaagagaagcagtgccggcggacagaattggcaa
agcaataaagggaagaatactgcagggaagggaagagaatacgcagagaagtttgccgat
aagaatgaacagcaggtaaagaatataaagtttgagaccggaagagcgcgaatgcctaag
aacaatgaaggtttcaaaggaaagcgtaagaatagccgctgcaaagtatccggggaatgc
ggcggatgtaaaatgatagatgtgccgtatgatgagcagcttatgcagaaagaaaaagaa
acggcagcattgttgaagccctttgtgaaattagagggtatcattggtatggaaaatcct
gagcattataggaataaagtaagtgccgccttcactcatgacagaaaaggaaagccgctt
tccggcgtatataaagaaggaactcactatatcataccggtagaggaatgtttattagaa
aacaagaaagcggatgagattataggttccatcagggaattgcttccttcctttaaaata
aaaacttatgatgaagatacagactatgggctgcttcgtcatgttatggtgcgtgtaggc
cataccagcggtcagataatggtagtgctcgttctttcatctcccattatgccttctaaa
aataactttgtaaaagcgctgcttaaattacaaccggaaattacaaccattgtaatcaat
acaaacgatcgaaagacgagtatggttctgggcgataaagagcaggtaatatacggcaaa
ggttatatcgaggatacattaaatggcaagatatttaaaatttcaccgaaatctttctat
caagttaattccgtacagactgaaaagctctatggaaaagcgatagaatatgccggtctg
accggaaaggaaacagtactcgatgcctattgcggcatcggaacaattggcattatggct
gccgatagagcaaagcaggtcatcggcgtggaattaaataaagatgccgtaaaagatgct
gtgatcaacgccaaacaaaatcaaatctccaacatccaattctaccaaaaagatgccgga
gaattcatgacgcaactcgcagaacaagaaacacaaatagataccgtattcatggatccg
ccccgcgcaggcagcgatgaagtattcttgaattcattggcgatgctgaaaccgaagaaa
attgtttatatatcttgtaatcctgagaccttggcaagggatctggaatatttgacgaag
aaaggatataaggcggagaagggtgtggctgtagatatgtttccgtttacgaatcatgtg
gaaaccgtctgttgtctacaaagggtgaatatgtag
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