Kineothrix sp. MB12-C1: RBB56_06750
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Entry
RBB56_06750 CDS
T09298
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
kib
Kineothrix sp. MB12-C1
Pathway
kib03030
DNA replication
kib03430
Mismatch repair
kib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBB56_06750
03430 Mismatch repair
RBB56_06750
03440 Homologous recombination
RBB56_06750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kib03032
]
RBB56_06750
03400 DNA repair and recombination proteins [BR:
kib03400
]
RBB56_06750
Enzymes [BR:
kib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBB56_06750
DNA replication proteins [BR:
kib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBB56_06750
DNA repair and recombination proteins [BR:
kib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBB56_06750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WMC93953
LinkDB
All DBs
Position
complement(1434722..1438171)
Genome browser
AA seq
1149 aa
AA seq
DB search
MAFTHLHVHTEYSLLDGSNKIKEYIKRVKELGMDSAAITDHGVMYGVIDFYKEAKAAGIN
PILGCEVYVAPNSRFDKELTGGEDRYYHLVLLAENNTGYANLMKIVSRGFTEGYYYRPRV
DMEVLEEFHEGIIALSACLAGEVQRYVMKGLPEEAKKAARKYENCFGKGNYFLELQDHGI
PEQKTVNSALLQMSKELDIPLVATNDVHYTYADDEKPHDILLCIQTAKKLADEERMRYEG
GQYYVKSEEDMKALFPYAWEAVENTQRIADRCHVDIEFGVTKLPHFEVPEGHDSLSYLNK
LCYDGLIERYGEVNDELKERLDYELGVIQSMGYVDYFLIVWDFINYAKQNDIIVGPGRGS
AAGSIVAYCLKITDIDPIKYSLLFERFLNPERISMPDIDIDFCFERRQEVIDYVGSKYGA
DKVVQIVTFGTMAAKGVIRDVGRVMDLPYAYVDSIAKMIPNELNITIDRALTINPEFRKL
YEQDEQMKTLIDMSKRLEGLPRHTSMHAAGVVICSRPAEEFVPLSRGSDGSITTQFSMNT
IEELGLLKMDFLGLRTLTVIQNAVRLVEKGRGIKLDMHGIDYDDKAVLSSIGTGRTDGIF
QLESGGMKSFMKELKPQNLEDIIAGISLYRPGPMDFIPKYIKGKNNHHAITYSCPQLEPI
LNPTYGCIVYQEQVMQIVRDLGGYTLGRSDLLRRAMSKKKQSVMEKERNNFIYGNSEEGV
PGCVANGIDEKTASQLYEDMMDFAKYAFNKSHAACYAIVSYQTAYLKYYYPVEFMAALLT
SVIDFSSKVSEYIMTCRSMGIAILPPDINAGEAGFSVSGGSIRYALTAIKGVGRPVIDAV
VKEREERGPFANLNDFIVRMSDKDMNKRTVENFIKSGALDGLGGTRKQFMNIYVQVMDRL
HQDKKNNMAGQISLFDIVSEEEKEDYEIKMPDVGEYSKEMRLALEKEVLGIYVSGHPLEE
YEEIWRKNTTNTTADFILDEESGETKARDGEPVIIGGIIADKKIKYTKNDKVMAFLQVED
LVGTVEVIVFPKDYERNVQKLMEDNKVFIKGRVSVEEDKDGKLICEKITGFDEITKKLWI
KFPTKEAYEEVEQSLLALLAASDGKDGVCIYVENPKAVKNLPPNRSVNADRELVEKLEEL
YGKENIKVM
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggcatttacccatttgcacgtccatacggaatacagccttttggacggttccaataaa
ataaaagaatatataaaacgcgttaaagagctcggtatggacagtgcggcgattaccgac
cacggcgttatgtacggtgttattgacttttataaggaagcgaaggcggctggcatcaat
ccgattcttggctgtgaagtatatgtggcacctaattctcgttttgataaggagctgacg
ggaggagaggacagatattaccatctcgttcttttggcagagaataatacaggatatgct
aatctgatgaaaatagtcagccggggatttactgaaggatattattacagaccccgtgtg
gatatggaggttctggaagagtttcatgaaggaattatagctctttccgcatgtctggca
ggggaagtgcagagatatgttatgaagggactgcccgaggaagccaaaaaggcagcgcgc
aaatatgagaactgcttcggaaaaggaaattatttcctggagctgcaggaccatggaatt
ccggaacaaaagacagtgaactccgctcttttgcagatgagtaaggagcttgacattccc
cttgttgctaccaatgacgttcattatacgtatgcggatgatgagaagcctcatgatatt
ttgctctgtatacagaccgcgaagaagctggcggatgaagagcgtatgcgctatgaaggc
ggacagtattacgtgaagagcgaagaggatatgaaagccttgttcccttatgcttgggaa
gcggtggaaaatacgcagagaattgcggaccggtgtcatgtggatattgagttcggcgtg
acgaagctgccacattttgaagtgccggaaggtcatgattccctttcttatctgaataaa
ttatgctacgacggactgatagaaagatacggagaagtaaacgatgagctaaaagagcgc
ctggattatgagctcggcgttattcaaagtatgggatatgtggattacttcttgatcgta
tgggatttcatcaattatgcgaaacaaaatgatattatcgtagggccggggcgaggttcg
gcggcaggaagtatcgtagcgtattgcttgaaaattacggatattgatcctattaaatat
agtttgctgttcgagcgtttcctgaacccggaacgaatctccatgcctgatatcgatatt
gacttttgtttcgagcgcaggcaagaggttatcgactatgtgggtagcaagtacggagcg
gacaaggtggtacagattgttaccttcggtacgatggctgcgaaaggtgttatacgcgat
gtgggaagggtgatggatcttccttatgcctatgtggattccattgctaagatgataccg
aatgaattgaatattacgattgaccgtgcgctcaccatcaaccctgaattccggaagctc
tatgaacaagatgaacagatgaagacccttatcgatatgagcaagcgcctggaaggactt
cccaggcatacgtctatgcatgcggcaggggtagtaatttgcagcagacctgcggaggaa
ttcgtgcccctttccaggggaagtgatggttctattactactcagttttctatgaatacg
attgaggaattgggccttttgaagatggacttcctcgggcttcgcacattgacggtcatt
cagaatgcagtacgtcttgtggaaaaaggccgtggcattaagctggatatgcatgggatt
gattacgatgacaaggcagttctttcctctattggtacgggaaggacggatggtattttc
caattggaaagcggcggaatgaaaagctttatgaaggagctcaagccccagaacctggag
gatatcatagcgggaatttccctttaccgcccgggtcccatggactttattcccaaatat
attaaaggaaagaataaccatcatgcaattacttattcctgccctcagttggagcctatt
ttgaatcctacgtatggttgcattgtataccaggagcaggttatgcagatcgtacgtgat
ttgggtggatatactcttggcagaagtgatttgttaaggagagccatgagtaagaaaaag
cagtcagtgatggaaaaggagagaaataactttatctatgggaattccgaggagggagtc
cccggatgcgtggctaacggaatcgatgagaagacggcgagtcagctttatgaagatatg
atggactttgccaagtatgcatttaataagtcccacgcagcatgttatgcgatagtttcc
tatcagactgcatatttgaagtattactatcctgtagaattcatggcagcgttacttact
tccgttattgacttttcaagtaaagtttcggagtatattatgacatgccgaagcatggga
attgctattttgccgcctgatattaatgcaggggaagccggattctccgtaagcggcggt
tccattcgctatgctttgaccgcaattaaaggtgttggccgccctgttatcgatgcggtg
gtgaaggaacgtgaagaaagaggaccttttgcgaatctgaatgattttatcgtacggatg
tcagataaagatatgaataagcgtaccgtggaaaactttatcaagtcgggagctttggat
ggacttggaggcacgagaaagcaatttatgaatatttatgtgcaggtaatggatcgtctg
caccaggataagaaaaataatatggcaggtcagatttcactttttgatatcgtgtccgaa
gaagaaaaggaagattacgagattaaaatgccggatgtaggagaatattccaaggagatg
aggcttgctcttgaaaaggaagtgctgggaatttacgtcagtgggcatcctctggaggaa
tatgaggagatatggcggaaaaacactacgaatacaacagcagattttattctggatgaa
gagagtggtgagacgaaagccagagacggggagcctgtcattatcggcggtattatagcg
gataagaagattaaatatacgaaaaatgataaggtaatggcttttttacaggtagaagat
ttggtcggaactgtagaagttatcgttttccccaaggattatgagaggaatgtccagaag
ctaatggaggataataaggttttcatcaaaggaagagtttctgtggaagaggataaggat
gggaagcttatttgtgagaagataaccggatttgatgaaatcacgaaaaagttgtggatt
aagtttcctaccaaagaagcctatgaagaagtggaacagtctcttcttgctctgcttgcc
gcttctgacggtaaggatggagtctgcatctatgtggaaaatccgaaagcagtgaagaat
ctacctcctaaccggagtgtcaatgcggatcgggagctagtggaaaagttggaagaatta
tatggaaaagaaaatataaaagtgatgtaa
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