Kineothrix sp. MB12-C1: RBB56_14240
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Entry
RBB56_14240 CDS
T09298
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
kib
Kineothrix sp. MB12-C1
Pathway
kib03030
DNA replication
kib03430
Mismatch repair
kib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBB56_14240 (holA)
03430 Mismatch repair
RBB56_14240 (holA)
03440 Homologous recombination
RBB56_14240 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kib03032
]
RBB56_14240 (holA)
03400 DNA repair and recombination proteins [BR:
kib03400
]
RBB56_14240 (holA)
Enzymes [BR:
kib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBB56_14240 (holA)
DNA replication proteins [BR:
kib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBB56_14240 (holA)
DNA repair and recombination proteins [BR:
kib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBB56_14240 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_delta2
Motif
Other DBs
NCBI-ProteinID:
WMC92012
LinkDB
All DBs
Position
3116922..3117902
Genome browser
AA seq
326 aa
AA seq
DB search
MQRINEDIKEGQFKNIYLLYGEESYLRKQYRDRLKNALMSEEDTMNYNYFEGKDISAGSV
IDLAETMPFFADRRVIIIENSGLFKHGGEQIAEYLNEPAQTAYIVFVEAEVDKRSKLFKT
VSSKGTAVEFPAQTEATLQKWILGMIKKEDKKISEPALRYFMEKTGTDMENIRKELEKLM
CYCMEKEAVTEQDIEDICTHRVSNHIFDMVNAIADKKQREALNLYYDLLALKEPPMRILF
LIARQYNMLLQVKEMKGKGYDNKKIGGKAGLLPFIAGKYVTQSAKFRLSDLRSALEACVE
AEEAVKTGKINDMMSVELLIVKYSAS
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtattaatgaggatataaaagagggtcaatttaagaatatatatcttttgtat
ggagaagagtcgtatcttcgcaaacagtatcgggacaggcttaaaaatgccctgatgagt
gaggaagatacgatgaattataattattttgaagggaaggatatttctgcgggatcagta
atcgatcttgcggagacgatgccctttttcgcggacagacgcgttattattattgaaaac
agcggacttttcaagcatggaggcgagcagatcgcggaatatttgaatgagccggcacag
acagcttatatcgtttttgtagaggcagaagtggataaaaggagtaaacttttcaagaca
gtttcctccaagggaacagcggtggagttcccggcacagacagaagccacacttcaaaaa
tggattctcggcatgattaagaaggaagataagaagatatccgagcctgcacttcgctat
tttatggagaaaacagggacggatatggagaatatccgtaaagagctggagaaattaatg
tgttactgcatggagaaagaggcagtgacagaacaggatattgaagatatttgtacccat
agagtgagcaatcatatcttcgatatggtgaatgctattgcggataagaagcagagagaa
gcgctgaatctgtattacgacttgctcgctttaaaggagccgccgatgcgcattctcttc
ttaatagccagacagtataatatgctccttcaggtgaaagaaatgaagggaaagggttat
gataataagaaaatcggtgggaaggcagggcttttgccttttattgccgggaaatacgtc
acacagtccgcaaagtttcgtctttctgatttgcgcagcgcccttgaagcctgtgtagag
gcagaagaagctgtgaagactgggaagataaacgatatgatgagcgtggaacttcttatt
gtgaagtacagcgcttcataa
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