Kineothrix sp. MB12-C1: RBB56_14610
Help
Entry
RBB56_14610 CDS
T09298
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kib
Kineothrix sp. MB12-C1
Pathway
kib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBB56_14610 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kib03019
]
RBB56_14610 (recQ)
03400 DNA repair and recombination proteins [BR:
kib03400
]
RBB56_14610 (recQ)
Enzymes [BR:
kib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBB56_14610 (recQ)
Messenger RNA biogenesis [BR:
kib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBB56_14610 (recQ)
DNA repair and recombination proteins [BR:
kib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RBB56_14610 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
AAA_30
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
WMC92078
LinkDB
All DBs
Position
3200211..3202052
Genome browser
AA seq
613 aa
AA seq
DB search
MEKAEKVLKQYFGYDTFREGQKELVESIIERKDTFGVMPTGAGKSICFQVPALMLEGITL
VVSPLISLMKDQVEGLNQAGVHAAFLNSSLTTRQYFKALEYAKGGRYKIIYIAPERLLTD
SFLDFAFSVKISMVVVDEAHCVSQWGQDFRPSYLKVTEFVDKLKYRPVISAFTATATKEV
REDIVKLLCLEAPTVVSTGFDRPNLYFAVQSPRDKYATMKNYLEMHPGQSGIIYCLTRKC
VEEIAERLDVEGFPVTKYHAGLSDVERRGNQEDFIYGRKEIMVATNAFGMGIDKSDVRYV
VHYNMPKNMESYYQEAGRAGRDGEPAECILLYGGQDVVTNQFFIDNNQDNESLDEEARKI
VMERDRQRLKKMTFYCFSNECLRDYILRYFGEYRSNYCGNCVNCLSQFEETDVTIVAKGI
IGCVESSGQRYGTNVILDTVHGANTAKIRNYWMDRNPYYGDLAKVQTYKLRQVMNYLLLH
EYLVVTDDEYAVVKLTEKSEFVLYDGETLVMKMAKEAEHPAKDKDTRRTKRKVEAGMGMS
GANVSLFERLRSLRSEIAREEKVPPYVVFSDKTLSHMCVVRPLTEAEMLTVSGVGEFKYK
KYGQRFLEVIRNA
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagcggaaaaagttttaaagcagtatttcggatatgatacgttcagagaggga
caaaaagagctggtagaaagcataatagagaggaaagataccttcggagtgatgccgaca
ggggcaggtaagtcgatatgctttcaagtgccggctcttatgctcgaagggattacctta
gtggtatcgccactgatttctttaatgaaagaccaggtggaagggctgaatcaggcagga
gtccatgcggcatttttgaatagttctcttacgacaaggcagtatttcaaggcattggaa
tacgcaaagggtggcagatataagattatttatatagcaccggaacgccttttgaccgat
agctttttggacttcgctttctccgtgaagatatctatggtagttgtggacgaggctcat
tgcgtatctcagtgggggcaggacttcagacccagttatttaaaagtgacagagtttgtc
gataagcttaagtatcgtccggttatcagcgcctttacggctacggcgacgaaggaagta
cgggaggatattgtaaagcttctctgtctggaggcaccaactgtggtatctaccggtttc
gatcgcccgaacctttattttgcagtacagtctccgagagataaatacgcgaccatgaag
aattatctggagatgcatccggggcagagcggcattatttattgccttacgaggaaatgc
gtagaagaaattgcagaaaggctagatgtggaaggctttccggtgaccaaatatcatgca
gggctttcggatgtagaaagaaggggaaaccaggaggattttatctacggcagaaaagaa
attatggtggcgactaacgcctttggcatgggaattgataaatcggacgtgcgctatgtg
gtacattataatatgcccaagaatatggagagctattatcaggaggccggaagggctggc
agggacggagaaccggcggagtgtatcttgctatatggcggacaggatgtagtgacgaat
cagtttttcatcgataacaatcaggataacgagtcactggatgaagaggcccgcaagatt
gtaatggagagggacaggcagagattgaagaaaatgacattctattgctttagcaatgaa
tgtctgagagattatattttacgttattttggggagtatagaagtaattactgtgggaac
tgtgtgaactgtctgagccagttcgaagagacagatgtgacaatagttgccaaaggtatt
atcggctgcgtggaaagtagcggacaaagatatggcaccaatgtaattctggatactgtc
catggagctaatacggcgaagatacgaaattattggatggatagaaatccatattacgga
gatttggcgaaggtacagacttataaacttcgtcaggttatgaactatcttctgttgcat
gaatatctggtggtaacggatgatgagtatgctgtggtgaaattgacagaaaagtccgaa
ttcgtattatatgatggtgagacccttgtaatgaagatggctaaggaagcggaacatccg
gcgaaggacaaagatacaaggagaacgaagcgaaaagtagaagcgggaatgggaatgagc
ggcgctaatgtatccttgttcgaacgtcttcgctcgcttcgttcagaaattgccagggag
gaaaaagttcctccttatgtggtattttcggataagacgctcagccatatgtgtgtggtg
cggcctttgacggaagcagaaatgctgacagtatccggagtcggtgagtttaaatataaa
aagtatgggcaacgttttctggaggtaatccggaatgcataa
DBGET
integrated database retrieval system
