Kineothrix sp. MB12-C1: RBB56_17505
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Entry
RBB56_17505 CDS
T09298
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kib
Kineothrix sp. MB12-C1
Pathway
kib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBB56_17505 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kib03019
]
RBB56_17505 (rnr)
03016 Transfer RNA biogenesis [BR:
kib03016
]
RBB56_17505 (rnr)
Enzymes [BR:
kib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RBB56_17505 (rnr)
Messenger RNA biogenesis [BR:
kib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RBB56_17505 (rnr)
Transfer RNA biogenesis [BR:
kib03016
]
Prokaryotic type
tRNA degradation factors
RBB56_17505 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
Motif
Other DBs
NCBI-ProteinID:
WMC92602
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All DBs
Position
3799885..3802029
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AA seq
714 aa
AA seq
DB search
MNRELYDKRKNLICELVADEMYVPMKEKEIAAFMQVSKEDREEFHQILEELLAQSRLSLT
SKGKYTKPDERIVTGIFISNARGFGFVEVEGRDGDLFIPDTKTNGAFHKDTVQVRLLPGG
KGKRQEAEVIKVLARGMTQIVGTFQKSRNFGFVLPDNSKLSEDIFVPLERSKGAVDGHKV
VVELTGYGDEQKGKKPEGKVIEILGHMNDPGVDILSIVRNFELPTGFEEKVLTQAERVAS
EVSEADMQGREDLRKVQMVTIDGEDAKDLDDAISISREGDNYLLGVHIADVTNYVQENSA
LDREALNRGTSVYLVDRVIPMLPHVLSNGICSLNQGEDRLALSCIMTVNSKGEVIDYRIA
ETVICIDRRMSYTSVKKILEDKDEAEREEHKEFVPMFEQMEELAAILREKRRKRGSIDFD
FPETKIILDQEGHPLEIKPYDRNTATKIIEDFMLLANETVAQHFYWLDLPFVYRIHGNPD
PEKITQLGIFIRNFGYGLKASKDEIHPKEIQKLLGRIEGTKEEMLISRLTLRSMKQAKYS
VDCTGHFGLACPYYCHFTSPIRRYPDLQIHRIIKEQLRGRLKEERTSHYEEILPGVADRS
SKMERRADEAERETDKLKKAEYMEKHIGEQFEGVISGITSWGIYVELPNTVEGLIHVSEL
EGDYFYYDELNYEMVGRDSGKRYRLGERIVVIVDGTDRFTRTVDFIPAEQEEGV
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgaatagggaattatatgataaaaggaagaatttaatatgtgaacttgtagcggatgaa
atgtatgttcctatgaaagaaaaagaaatagcagcttttatgcaagtgtcaaaggaagat
agagaggaatttcatcagattctggaagaacttttagcccagagccgcctgagtcttact
tccaaagggaagtataccaagccggatgagagaattgtgacaggaatctttattagcaat
gccagaggatttggctttgttgaggtagaaggccgagatggggatttgtttattcccgat
actaagacaaatggagcttttcataaggatacggtacaggtaaggcttcttccgggtggg
aagggaaagcgccaagaggcagaagtaattaaggttcttgcccgtggaatgacgcagatt
gtaggtacattccaaaagtccaggaatttcggatttgttttaccggataatagcaagcta
tcggaagatatcttcgttccgttggaacgttctaaaggggcggtagatgggcataaagta
gtggtagaacttactggttacggcgatgaacaaaaaggaaagaagccggaaggaaaagtt
atcgagattctggggcatatgaatgatccgggagtggatatcttatcgattgtaagaaat
ttcgaattgcctacaggttttgaagagaaggtattgacgcaggcagagcgtgttgcttca
gaagtatccgaggctgatatgcagggaagagaagatttgcggaaggtacagatggtaacg
atagacggtgaagatgccaaagacttggatgatgcaatcagcatatcgagggagggagat
aattaccttcttggtgttcatattgccgatgttaccaattatgttcaggagaattcagcg
ttagacagagaagcacttaacagagggactagcgtctatttggtggacagggtaattcca
atgcttccccatgtactttctaatgggatatgttccttaaatcaaggggaagataggctg
gcgcttagctgcattatgacagtgaattccaaaggtgaggtaatcgattaccgaattgca
gaaacggttatctgtatcgatcgacggatgagttacacgagcgtaaagaagattcttgaa
gataaggatgaagcggaacgtgaagagcataaagagtttgtgcctatgttcgaacagatg
gaagaactcgcagctattttgcgggagaaaagaaggaaacgaggctctatcgattttgat
ttccctgaaacaaaaattatattggaccaagaagggcatccgttggagataaagccctac
gacagaaatacagcgacgaaaattattgaagactttatgcttttagcgaatgagacagta
gcacagcatttttactggctcgatcttcctttcgtttatcgaattcatggcaatccggat
ccggagaagattacgcagctcggtatatttattcgtaacttcgggtatgggcttaaagcc
tctaaggacgagatacacccgaaagagattcagaagttattagggagaattgagggaacg
aaggaggaaatgttaattagcagacttaccctccgaagtatgaagcaagcaaagtattcc
gtagattgtacgggacattttgggctggcttgtccctattactgtcattttacatctccg
attcgtaggtatccggatttacaaatacaccgcattattaaggaacagcttagagggcgt
ctaaaagaagaacgcacctcccattatgaggagattcttcccggagtggcggatcgttcc
tctaagatggagcggcgtgcggatgaggcagagcgtgagaccgataagttaaagaaagca
gaatatatggagaaacatatcggagagcaattcgaaggtgtgatttcgggtattacaagt
tggggcatctatgtggaactgcccaatacggtagaaggacttatccatgtatctgaatta
gaaggcgattatttctattacgatgaattgaattatgagatggtaggaagggattcgggc
aaacgctatcgactgggagaacgtattgtggttatagtggatggtaccgaccgcttcacc
agaacggtggacttcatacctgcagagcaggaagaaggggtgtag
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