Kineothrix sp. MB12-C1: RBB56_17685
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Entry
RBB56_17685 CDS
T09298
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
kib
Kineothrix sp. MB12-C1
Pathway
kib03030
DNA replication
kib03410
Base excision repair
kib03420
Nucleotide excision repair
kib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBB56_17685 (polA)
03410 Base excision repair
RBB56_17685 (polA)
03420 Nucleotide excision repair
RBB56_17685 (polA)
03440 Homologous recombination
RBB56_17685 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kib03032
]
RBB56_17685 (polA)
03400 DNA repair and recombination proteins [BR:
kib03400
]
RBB56_17685 (polA)
Enzymes [BR:
kib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBB56_17685 (polA)
DNA replication proteins [BR:
kib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBB56_17685 (polA)
DNA repair and recombination proteins [BR:
kib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RBB56_17685 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBB56_17685 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
HHH_2
Motif
Other DBs
NCBI-ProteinID:
WMC92628
LinkDB
All DBs
Position
3835186..3837834
Genome browser
AA seq
882 aa
AA seq
DB search
MSKIVLIDGHSILNRAYYGVPDLTNSEGLHTNAVYGFLNIMFKILDEENPEYLVVAFDVK
DPTFRHEIYTEYKGTRKPMPEELHEQVPVMKEVLQAMGITIMEKPGLEADDILGTIARRS
EKEGMDVALISGDRDLLQIASEKIKIRIPKTKGGKTEIEDYYASDVKEKYQVTPLQFIDL
KALMGDTSDNIPGVPKVGEKTATELMVKFGSLEGIYEHIDEVTKKAVKESLVNNKHLAEL
SKVLATIEVDGDIQFSYEDAQIQDFYTEEAYKQFKRLEFKNMLSRFESGSVTNHQTDYFT
EVTDLGKAEEIFAKIDTLGDGKYIAFDVIEDSSREEDFVGISLALSEQEVYFVKAEGFLT
KQYLTDKLTAMADKVKLVTFNIKNKYSYIDTDQTENLFDILIAAYLLNPLKNDYEAEDIA
NEYLNLMIPSRAQLFGKESFRKAAEKKAKELLEYACFLAYVEYIAVSVLENKLEEAGMEH
LMHEIEMPLSYVLYDMEQEGIMVDPEQLKEYGEALSGRIGELEQKIHEQADYDFNINSPK
QLGEVLFERLKLPGGKKTKTGYSTAADVLDKLAPDHPIVSDVLEYRGLAKLKSTYADGLA
AYIGEDKRIHGKFNQTIAATGRISSTEPNLQNIPMRMELGRLIRKAFIPKEGFVFADADY
SQIELRVLAHMSGDEQLIEAYRMEEDIHRITASKVFHTPFEEVTDLQRRNAKAVNFGIVY
GISSFGLSQDLSISRKEAAEYIEQYFATYPDVKKFLDHLVEDAKKNGYVTTMFGRRRPVP
ELSSSNFMQRSFGERVAMNSPIQGTAADIIKVAMIRVWKRLKEENMRSKLILQVHDELLV
EAAKDEVDQVSRIVKEEMQAAAELKVVLEADLHIGANWYEAK
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagatagttttaatagacggacatagcattttaaatagagcatattatggagtg
ccggatttaacaaattcggaaggacttcacacgaatgcggtgtatggattccttaatatt
atgtttaagattctggatgaggagaacccggagtatcttgtggttgccttcgatgtgaag
gatccaaccttccgtcatgaaatctatacagaatataaagggacgagaaaacctatgccg
gaagagctgcacgagcaggtgccggttatgaaggaagttcttcaggcgatgggaattact
ataatggaaaagcccggattagaggccgatgacattcttggaacgattgccagacgttcg
gaaaaggaaggcatggatgtggctttaatctccggcgacagagacttgctgcaaattgcc
tccgagaagattaaaataaggattcctaagacaaaaggcggaaagacagagattgaggac
tattatgcatcggatgtaaaggagaagtatcaggtgactccgctccaatttatcgatttg
aaggcgctgatgggagatacttcggataatattcccggtgttccgaaggttggagagaaa
acggcaacggaacttatggttaaatttgggtccttagaaggaatctatgaacatattgac
gaggtcacaaagaaggcggtgaaagaatcgcttgttaataataagcatctggcggaattg
agtaaggtgcttgctacgatagaggtagatggagatatccagttttcctatgaagatgct
cagattcaagatttttatacggaagaagcttataagcagttcaaacggctggaatttaaa
aatatgcttagccgatttgaaagtggttctgtaacgaatcatcagacagattactttaca
gaggtaacagatcttggtaaggcggaagaaatctttgctaaaatagatacattaggcgat
gggaagtatatcgccttcgatgtgatagaagatagcagcagagaagaggattttgtcgga
atttctctggccctttccgagcaagaagtttattttgtaaaagcggaagggtttttaaca
aagcaatatttaacggacaagctcactgctatggcagataaggtgaagcttgttactttt
aatatcaaaaataagtatagctacatcgatacagaccaaacggagaacctattcgatata
ctaattgccgcctatctgttaaatcctttaaaaaatgattatgaggcagaggatattgcc
aatgaatatttaaacttaatgattccttcaagagcacagttatttggaaaagagagtttc
cggaaggctgcagaaaaaaaggcgaaagaattgttagaatatgcttgtttcctcgcttat
gtagaatatatagcagtttctgttttagaaaataagttagaagaagccggaatggagcac
ctgatgcatgagatagagatgcctttatcttatgtattatacgatatggaacaggaaggg
attatggtagatcccgaacagttaaaagaatacggcgaagcgttaagcgggcgtatcgga
gaactggaacagaagatacatgaacaagcggattatgatttcaatattaattcgccaaaa
caacttggcgaagtgttatttgagcgccttaaactgccgggaggaaagaaaacgaagacc
ggctattccacagcggcagatgtgctggataaattagctccggatcatcccattgtgtcg
gatgttttggaataccggggacttgcgaagttaaaatctacctatgcagatggactggca
gcttatataggagaagataaacggatacacggtaagtttaaccagacgattgcagcgaca
ggccgtattagctctacggagccgaatttgcagaacataccgatgcgtatggagcttggg
cgtctgattcgcaaggcttttattcctaaggaaggctttgtctttgcggatgccgattat
tcccagattgaactgcgtgtattggcgcatatgtcaggagatgagcagttaattgaagct
tatcgtatggaggaggatattcatagaattactgcttccaaagtattccacacgcctttt
gaagaggtgacagatttacaaagaaggaatgcgaaagctgtgaactttggtatcgtttat
ggaattagttcctttggtttaagccaggatttgagtatttccagaaaagaagcggcagaa
tatatcgaacagtattttgcaacctatcccgatgtaaaaaagtttttggaccatctggta
gaggatgcgaagaagaatgggtatgtgacgacgatgttcggacgacgaagaccggtgcct
gaactttcatccagcaatttcatgcaacgatcctttggagaacgtgtggcaatgaattca
ccgatacagggaactgctgcagatattatcaaggtggctatgattcgtgtatggaaacgt
ttgaaggaagaaaatatgagatcgaaactgattctgcaagtgcatgacgaacttctggtg
gaggctgcaaaagatgaagtggatcaggtctcacggattgtaaaagaggaaatgcaggcg
gcggccgagcttaaagtcgttctggaagcggatttgcatataggagccaattggtacgaa
gcgaaataa
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