Kitasatospora sp. CMC57: KCMC57_up20520
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Entry
KCMC57_up20520 CDS
T11196
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
kic Kitasatospora sp. CMC57
Brite
KEGG Orthology (KO) [BR:
kic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kic03016
]
KCMC57_up20520
Enzymes [BR:
kic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KCMC57_up20520
Transfer RNA biogenesis [BR:
kic03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KCMC57_up20520
Prokaryotic type
tRNA splicing ligases
KCMC57_up20520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
BFV56948
LinkDB
All DBs
Position
complement(2277955..2279148)
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AA seq
397 aa
AA seq
DB search
MSYTEVPGVRVPIRMWTNPSTVEGQAMQQLRNISSLPWLHGLAVMPDVHLGKGATVGSVI
AMKGAVCPAAVGVDIGCGMSAVKTSLTAKDLPDDLSRLRSKIEQVIPVGRGLHSDPVDPR
KLHGFRAAGWDDFWSRFDGIAGEVKWKRERAAQQMGSLGGGNHFVEVCVDTSDSVWLMLH
SGSRNIGKELAEHHMGVARSLPHNQNLVDRDLAVFISDTPQMAAYRSDLFWAQEYAKNNR
AVMMALFQDIVRREFPKARVAYDQVISCHHNYVSEERYDGVDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVRGLGNEAAFNSASHGAGRKMSRTAAKKKFTAQDLAEQTKGVECRKDTG
VVDEIPGAYKSIEKVMEQQRDLVEVVAQLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaccgaagtccccggcgtccgggtcccgatccggatgtggaccaacccctcg
acggtcgagggccaggccatgcagcagctgcgcaacatcagctcgctcccctggctgcac
ggcctcgccgtgatgcccgacgtccacctgggcaagggcgccaccgtcggctccgtcatc
gccatgaagggcgcggtctgcccggcggcggtcggcgtcgacatcggctgcggcatgagc
gcggtgaagacctcgctgaccgccaaggacctccccgacgacctgtcgcgcctgcggtcc
aagatcgaacaggtcatcccggtcggccgtggcctgcactccgacccggtcgacccgcgc
aagctgcacggcttccgggcggcggggtgggacgacttctggagccgcttcgacggcatc
gccggcgaggtgaagtggaagcgcgagcgggccgcccagcagatgggttcgctgggcgga
ggaaaccacttcgtggaggtatgtgtcgatacatccgattcggtgtggctcatgctgcac
tcgggttcgcggaacatcggcaaggagctcgctgagcaccacatgggtgtcgcccgctcg
cttccgcacaaccagaacctggtcgaccgcgacctcgcggtcttcatctcggacaccccg
cagatggcggcctaccgcagcgacctgttctgggcgcaggagtacgcaaagaacaaccgc
gcggtgatgatggcgctgttccaggacatcgtccggcgcgagttcccgaaggcgagggtc
gcctacgaccaggtgatcagctgccaccacaactacgtgtccgaggagcgctacgacggg
gtcgacctgctggtcacccggaagggcgcgatccgggccggctcgggcgactacggcatc
atcccgggctcgatgggcaccggctcgtacatcgtccgtggtctcggcaacgaggcggcg
ttcaactcggcctcgcacggcgccggccggaagatgagccgtacggcggcgaagaagaag
ttcaccgcgcaggacctggcggagcagaccaagggcgtcgagtgccgcaaggacaccggc
gtcgtggacgagatcccgggcgcctacaagtctatcgagaaggtcatggagcagcagcgt
gacctggtcgaggtggtcgcccagctcaagcaggtcgtctgcgtgaagggctga
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