Kitasatospora sp. CMC57: KCMC57_up20670
Help
Entry
KCMC57_up20670 CDS
T11196
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
kic Kitasatospora sp. CMC57
Pathway
kic02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kic00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KCMC57_up20670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kic03021
]
KCMC57_up20670
Transcription machinery [BR:
kic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KCMC57_up20670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HC2
Motif
Other DBs
NCBI-ProteinID:
BFV56963
LinkDB
All DBs
Position
complement(2297502..2299100)
Genome browser
AA seq
532 aa
AA seq
DB search
MSASTSRSLPPEIAESAALLALIERGKAQGQIAGDDVRQAFEADQIPVTKWKNVMRSLNQ
VLIEEGVDLMVSAAEPTAKRKSVAAKSTAKRTAAKAVTTRPSAPTKPPVRIAPSANPVAA
PVVAEVRVVESLETDAVTGEVKVVTAKKVAAPAKKAVAKKAAAPAKKTAAKKTAAKAGGD
EPGPEDEIEDDALPGVKVDGDAEPEEESKGFVLSDDDEDDAPAQQVAVAGATADPVKDYL
KQIGKVPLLNAEQEVELAKRIEAGLFAEDKLSAADKLAPKLKRELEIIAEDGRRAKNHLL
EANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT
RAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKY
GREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVS
MRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggccagcacatcccgttcgctcccccccgagatcgccgagtccgcggctctgctt
gcgctcatcgagcggggcaaggcccaggggcagatcgccggtgacgacgtgcgtcaggct
ttcgaggcggaccagatcccggtcaccaagtggaagaacgtcatgcgcagcctcaatcag
gttctgattgaggagggtgtggacctcatggtcagcgcggccgagcccaccgccaagcgc
aagagcgtcgcggccaagagcaccgccaagcgcacggcggccaaggcggtcaccacccgc
ccgtccgccccgaccaagccgccggtgcggatcgcgccgtccgcgaaccccgtcgcggcc
ccggtcgtcgccgaggtccgcgtggtggagagcctggagacggacgccgtcaccggcgag
gtcaaggtcgtcaccgccaagaaggtggccgcgcccgcgaagaaggcggtcgcgaagaag
gccgccgccccggcgaagaagaccgccgccaagaagaccgccgccaaggcgggcggcgac
gagcccggtcccgaggacgagattgaggacgacgcgctgcccggcgtcaaggtcgacggc
gacgcggagccggaggaggagtcgaagggcttcgtgctctccgacgacgacgaggacgac
gcgccggcccagcaggtcgcggtcgccggtgccaccgccgacccggtcaaggactacctg
aagcagatcggcaaggtcccgctgctcaacgccgagcaggaggtcgagctcgccaagcgg
atcgaggccggcctgttcgccgaggacaagctgtccgcggccgacaagctcgccccgaag
ctcaagcgcgagctggagatcatcgccgaggacggccgccgggccaagaaccacctgctg
gaggccaacctccgcctggtggtctcgctggccaagcgctacaccggccgcggcatgctc
ttcctggacctgatccaggagggcaacctcggtctgatccgtgcggtcgagaagttcgac
tacaccaagggctacaagttctcgacctacgcgacctggtggatccggcaggcgatcacc
cgagcgatggccgaccaggcccgcaccatccgcatcccggtgcacatggtcgaggtcatc
aacaagctcgcccgcgtgcagcgccagatgctccaggacctgggccgcgagcccaccccg
gaggagctggccaaggaactcgacatgacccccgagaaggtcatcgaggtccagaagtac
ggtcgcgagccgatctccctgcacacgcccctcggcgaggacggcgacagcgagttcggt
gacctgatcgaggactccgaggcggtcgtcccggccgacgcggtctccttcaccctgctc
caggagcagctgcactccgtcctcgacacgctcagcgagcgtgaggcgggcgtggtctcg
atgcgcttcggcctgacggacggtcagccgaagaccctggacgagatcggcaaggtctac
ggcgtgacccgcgagcggatccgccagatcgagtccaagaccatgtccaagctgcgccac
ccgtcgcgctcgcaggtcctgcgcgactacctggactga
DBGET
integrated database retrieval system
