Kitasatospora sp. CMC57: KCMC57_up33250
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Entry
KCMC57_up33250 CDS
T11196
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kic Kitasatospora sp. CMC57
Brite
KEGG Orthology (KO) [BR:
kic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kic03019
]
KCMC57_up33250 (hrpA)
Enzymes [BR:
kic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KCMC57_up33250 (hrpA)
Messenger RNA biogenesis [BR:
kic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KCMC57_up33250 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
AAA_16
SRP54
NNH7
nSTAND_NTPase5
PhoH
Cas3-like_C_2
SLFN-g3_helicase
ResIII
NTPase_1
DUF6893
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BFV58221
LinkDB
All DBs
Position
complement(3743531..3747487)
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AA seq
1318 aa
AA seq
DB search
MSSPQAQPTVVPTVGELAARLPELTLRDQQRIGRRLDGARRVRQPEARDKIAAELAVEID
RAELRVEQRRNAVPEITYPAELPVSQKKDDILAAIRDHQVVIVAGETGSGKTTQIPKICL
ELGRGVKGLIAHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQVGPDTLVKLMTD
GILLAEIQTDRELRQYDTLIIDEAHERSLNIDFILGYVKQLLPRRPDLKVIITSATIDPE
RFANHFGDAPIIEVSGRTYPVEVRYRPILEEGEDDSDLDRDRDQVQAICEAAQELQAEGP
GDILVFLSGEREIRDTADALNKLNLKFTEVLPLYARLSSAEQHRVFQRSNSRRIVLATNV
AETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEAVSQASANQRKGRCGRTSDGICIR
LYSEEDFLSRPEFTDAEILRTNLASVILQMTAAGLGDIAAFPFLDPPDSRNIKDGVNLLH
ELGALDPAEKDHRKRLTPLGRKLAQLPVDPRMARMVIEADRLGVVRDVMVIAAALSIQDP
RERPAEKRQAADERHRRFNSETSDFLAFLAMWRYVKEQQRELSSSAFRRMCKTEFLNYLR
IREWQDIYTQLRTVAKQLGVTIEEPHEDAEPDADRIHQALLAGLLSHLGLFDVEKREYAG
ARGARFAIFPGSGLFKKPPRWVMSAELVETSRLWARINAKIEPEWVEPLAGHLIKKSYSE
PHWEKKAGAVLAYEKVTLYGMPIVAQRKINYGKIDQELCRELFIRNALVEGDWETHHRFW
GENRQLLSEVAELENRARRRDILVDDQTLFDFYDARLPEDIVSTRHFDAWWKKARHDQPD
LLNFEKSMLINDSADGVTEADYPDYWQQGKLRFKLTYQFEPGSDADGVTVHIPLPVLNQV
TAEGFDWQIPGLRTELVTAYIRALPKAIRRNFVPAPDFAAAALRQVKDRQEPLLPTLEHI
LKRMSAITIPPEAWDDERVPDHLRITFRVVDGKKKLAESKDLEELRLRLKPKLKETLSSA
ASGQGIERTGLTAWPADLPVLQRTFEQRSRGHSLRAYPALVDEGDSVAIRLFDTPEAQQQ
EMWAGTRRLLMLSINSPAKSIQQRLGNQAKLALSYSPHGSIPALFEDIVAAATDRLMALH
GGPAWDEPSFTKLYDKVRADLYELSADTTLRTATALIAFHKASNRLKGVSSPVLLTAVND
VRLHLASLVHPGFVASTGWQRLPDLKRYLLAVDRRLEALPNHPQRDLLHLRKVQQVQDAY
GELLAKVPAGREPSAEVRAVRWMIEELRVSFFAQGLGTPTPISEKRILKAMEAAAAGL
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgagttctccccaagcccagcccaccgtggtacccaccgtcggggagctggccgctcgg
ctgcccgagctgacactgcgtgaccagcagcggatcggccgtcggctggacggggcgcgc
cgggtccgccagccggaggcccgcgacaagatcgcggccgagctggcggtggagatcgac
cgcgccgagctccgggtcgaacagcgccggaacgcggtgccggagatcacgtacccggcc
gagctgccggtcagccagaagaaggacgacatcctggcggcgatccgggaccaccaggtg
gtgatcgtcgcgggtgagaccggctccggcaagaccacccagatcccgaagatctgtctg
gagctgggccggggcgtgaagggtctgatcgcccacacccagccgcgccggatcgcggcc
cgtacggtggcagagcgggtggccgaggagctgcgcacgccgctcggcgaggcggtcggc
tggaaggtccggttcaccgaccaggtcggcccggacaccctggtgaagctgatgacggac
ggcatcctgctggccgagatccagaccgaccgggagctccgccagtacgacaccctgatc
atcgacgaggcgcacgagcgtagcctcaacatcgacttcatcctgggctacgtcaagcag
ctgctgccgcgccggccggacctcaaggtcatcatcacctcggcgaccatcgacccggag
cggttcgccaaccacttcggtgacgcaccgatcatcgaggtctcgggacgcacctatccg
gtcgaggttcgctaccgcccgatcctggaggagggcgaggacgactccgacctggaccgc
gaccgagaccaggtgcaggcgatctgcgaggcggcccaggagctccaggccgaggggccg
ggcgacatcctggtcttcctctccggcgagcgggagatccgcgacaccgcggacgcgctc
aacaagctcaacctgaagttcaccgaggtgctgccgctgtacgcccggctctcctcggcc
gagcagcaccgggtcttccagcgctccaacagccggcggatcgtgctggccaccaacgtg
gccgagacctcgctgaccgtccccggcatcaagtacgtgatcgacccgggcaccgccagg
atctcccgctacagccaccgcaccaaggtgcagcggctgccgatcgaggcggtcagccag
gccagcgccaaccagcgcaagggccgctgcggccggacgtccgacggcatctgcatccgg
ctgtactcggaggaggacttcctctcccgccccgagttcaccgacgcggagatcctgcgc
accaacctcgcctcggtgatcctccagatgaccgcggccgggctcggcgacatcgccgcc
ttcccgttcctcgacccgccggactcgcggaacatcaaggacggcgtcaacctgctgcac
gagctgggtgcactcgatccggccgagaaggaccaccgcaagcggctcaccccgctcggc
cgcaagctggcccagctcccggtcgacccccggatggcccggatggtgatcgaggccgac
cggctcggcgtggtcagggacgtgatggtgatcgccgccgcgctctccatccaggacccg
cgcgagcgcccggccgagaagcgccaggcggccgacgaacggcaccgcaggttcaactcg
gagacctccgacttcctggctttcctggcgatgtggcggtacgtcaaggagcagcagcgg
gagctctcctcctcggccttccgccggatgtgcaagaccgagttcctgaactacctgcgg
atacgggagtggcaggacatctacacccagctgcgcaccgtcgcgaagcagttgggcgtc
acgatcgaggagccgcacgaggacgccgagccggacgccgaccggatccaccaggcgctg
ctggccggtctgctctcccacctcggcctgttcgacgtggagaagcgcgagtacgccggt
gcccggggcgcgcggttcgcgatcttccccggctcggggctgttcaagaagccgccgcgc
tgggtgatgtcggccgagctggtggagacctcccggctgtgggcccggatcaacgccaag
atcgagcccgagtgggtcgagccgctggccggtcacctgatcaagaagagctacagcgag
ccgcactgggagaagaaggccggcgcggtgctggcgtacgagaaggtcaccctgtacggg
atgccgatcgtcgcccagcggaagatcaactacgggaagatcgaccaggagctctgccgc
gagctgttcatccgcaacgcgctggtcgagggcgactgggagacccaccaccgcttctgg
ggcgagaaccgccaactcctcagcgaggtggcggagttggagaaccgggcccgccgccgg
gacatcctggtggacgaccagaccctgttcgacttctacgacgcccggctgcccgaggac
atcgtctccacccggcacttcgacgcctggtggaagaaggcacggcacgaccagccggac
ctgctgaacttcgagaagtcgatgctgatcaacgactcggcggacggcgtcaccgaggcg
gactacccggactactggcagcaggggaagcttcgtttcaagctgacctaccagttcgag
cccggcagcgacgcggacggcgtcaccgtgcacatcccgctcccggtcctcaaccaggtc
accgccgagggcttcgactggcagattcccggcctgcggacggagctggtgaccgcgtac
atccgggccctgcccaaggcgatccggcgcaacttcgtgcccgccccggacttcgccgct
gccgcactgcggcaggtgaaggaccgtcaggagcccctgctgcccacgctggaacacatc
ctcaagcggatgtcggcgatcaccatcccgccggaggcctgggacgacgagcgcgtcccc
gaccacctgcggatcaccttccgggtggtggacggcaagaagaagctggcggagtccaag
gacctggaggagctgcggctgcggctcaagccgaagctcaaggagaccctctcctcggcc
gcctccggccagggcatcgagcggaccggcctgaccgcctggccggccgacctgccggtg
ctccagcgcacctttgagcagcgctcgcgcggccactcgctgcgggcctacccggccctg
gtggacgagggcgactcggtcgcgatccggctcttcgacaccccggaggcccagcagcag
gagatgtgggcgggcacccggcggctgctgatgctgagcatcaactcccccgccaagtcc
atccagcagcggctcggcaaccaggccaagctggcactgtcgtacagcccgcacgggtcc
atccccgcgctgttcgaggacatcgtggcggccgccaccgaccggctgatggcgctgcac
ggcgggccggcctgggacgagccgtccttcaccaagctgtacgacaaggtgcgggccgac
ctgtacgagctgtccgccgacaccacgctgcggacggccaccgcgctgatcgccttccac
aaggcgtcgaaccggctgaagggggtctccagcccggtgctgctgaccgccgtcaacgac
gtccgactgcacctggcctcgctggtgcaccccggtttcgtcgcctccaccggctggcag
cggctgccggacctcaagcgctatctgctcgcggtcgaccggcggctcgaagcgctgccc
aaccacccgcagcgcgacctgctgcacctgcggaaggtccagcaggtgcaggacgcctac
ggcgagctgctggccaaggtcccggccggccgggagccgtcggccgaggtcagggcggtc
cgctggatgatcgaggagctccgggtgagcttcttcgcccagggcctcggcaccccgacg
cccatctcggagaagcgcatcctcaaggcgatggaggcggccgcggccgggctgtag
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