Kitasatospora sp. CMC57: KCMC57_up38570
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Entry
KCMC57_up38570 CDS
T11196
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kic Kitasatospora sp. CMC57
Pathway
kic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KCMC57_up38570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kic03021
]
KCMC57_up38570
03400 DNA repair and recombination proteins [BR:
kic03400
]
KCMC57_up38570
Enzymes [BR:
kic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KCMC57_up38570
Transcription machinery [BR:
kic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KCMC57_up38570
DNA repair and recombination proteins [BR:
kic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KCMC57_up38570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
BFV58753
LinkDB
All DBs
Position
4305680..4309570
Genome browser
AA seq
1296 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDDERRQRDLPSLEAHVSVERQQIENRRDSDLEARAKKAETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQRELDRLDEVWARFKNLKVQDLEGDELL
YRELRDRFGTYFSGSMGAAALKDRLETFDLAEESERLREIIRTGKGQKKTRALKRLKVVS
AFLQTTNKPNGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTSDRENVKGAGR
SFTSAAEAVMAFDAKQIDVQAVIDIRLPIGTVPPRGWTPPVDEDGQPTWFEGEPFRLRTT
LGRALFNELLPEDYPFVDYEVGKKQLSAIVNDLAERYPKVVVAATLDNLKAAGFHWATRS
GVTVSISDVVVPPNKPQILEGYEAQAEKVQRQYERGLITNEERKSELIGIWTRATNEVAE
AMNANFEKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLTVL
EYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLAIGVVENG
VLRKTDDVETSVYARMLAEDITVDGKLLATANTDLGDVLIDELIRHGISEVKTRSILTCE
SAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGL
PRVVELFEARTPKGVAPVAEAQGRVRIEDTEKTRKLVVTPDDGSDEIAYPISKRIKLLVS
EGEAVAVGQKLTAGTMNPHDVLRIMGQRAVQIHLVAEVQKVYNSQGVSIHDKHIEIIIRQ
MLRRVTIIESGDAELLPGELVERGRFETENRRVVSEGGHPASGRPQLMGITKASLATESW
LSAASFQETTRVLTDAAIHAKSDPLLGLKENVILGKLIPAGTGLPRYRNIRVEPTEEAKA
AMYSAVGYDDYDLSPFSAGSGQAVPLDDYDYGPYTG
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgacgtcaacttcttcgacgagctccgcatcggcctcgcgaccgccgacgacatc
cgccagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggaaaaggacgggctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccg
gtcacccacatctggtacttcaagggtgtgcccagccgcctcggctacctgctcgacctg
gctccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacctgggtggac
gacgagcgtcgccagcgcgacctcccgtcccttgaggcgcacgtctcggtcgagcgtcag
cagatcgagaaccgccgcgactccgacctggaggcccgggccaagaaggccgagaccgac
ctggccgagctcgaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgagggt
gccgagcgcgagatgaagcagctgcgcgaccgcgcgcagcgcgagctggaccgtctggac
gaggtctgggcccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacgtacttctccggctcgatgggcgccgcggcg
ctcaaggaccgcctggagacgttcgacctcgccgaggagtccgagcgcctgcgcgagatc
atccggaccggcaagggccagaagaagacccgggcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagaccaccaacaagcccaacggcatggtgctggactgcgtcccggtcatc
ccgccggacctccgcccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtctgaagcgtctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggcggtcgacgcc
ctcttcgacaacggccgtcgtggccgcccggtcacgggccccggcaaccgtccgctgaag
tccctcagcgacatgctgaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgagtcgactactcggcccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcgcccgc
ccggtcgtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctcaaccgt
gcacccaccctgcaccgcctcggcatccaggccttcgagccccagctggtcgagggcaag
gccatccagatccacccgctcgtctgtaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccggccgacggtcgccccgtcaccatgccgacccaggac
atggtgctcggactgttcttcctgacctcggaccgcgagaacgtgaagggcgccggccgc
tccttcacctccgccgccgaggccgtgatggcgttcgacgccaagcagatcgacgtccag
gccgtgatcgacatccgcctgccgatcggcaccgtcccgccccgtggctggaccccgccg
gtcgacgaggacggtcagccgacctggttcgagggcgagcccttccgtctgcggacgacc
ttgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgactacgag
gtgggcaagaagcagctctccgcgatcgtcaacgacctggccgagcggtaccccaaggtc
gtcgtggcggcgaccctggacaacctgaaggcggccggtttccactgggccacccgctcg
ggtgtcaccgtgtcgatctccgacgtcgtggtgccgccgaacaagccgcagatcctcgag
ggctacgaggcccaggccgagaaggtgcagcgtcagtacgagcgcggcctgatcaccaac
gaggagcgcaagagcgagctcatcggcatctggacccgcgcgaccaacgaggtcgccgag
gccatgaacgccaacttcgagaagacgaaccccatcttcatgatggtggactcgggcgct
cgaggaaacatgatgcagatgcgtcagatcgccggtatgcgtggtctggtgtcgaacgcc
aagaacgagacgattccccgtcccatcaaggcgtccttccgtgagggcctcaccgttctg
gagtacttcatctccacccacggtgcccgtaagggtctggccgacaccgcgctgcgtacc
gccgactccggttacctcacccgtcgtctggtcgacgtctcccaggacgtcatcatccgc
gaggaggactgcggtaccgagcgtggcctcaagctggccatcggcgtggtcgagaacggc
gtccttcgcaagacggacgacgtcgaaaccagcgtctacgcccgcatgctggccgaggac
atcacggtggacggcaagctcctcgccaccgccaacaccgacctcggtgacgtcctgatc
gacgagctgatccgccacggcatcagcgaggtcaagacccgctcgatcctgacctgcgag
tccgcggtcggcacctgtgccttctgctacggccgttcgctggccaccggcaagctggtc
gacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagcccggtacccag
ctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacgcagggtctg
ccccgtgtcgtcgagctcttcgaggcccgtacccccaagggtgtggccccggtggccgag
gcccagggccgggtgcggatcgaggacaccgagaagacccgcaagctcgtcgtcaccccc
gacgacggcagcgacgagatcgcctacccgatctccaagcgcatcaagctgctggtctcc
gagggcgaggcggtcgcggtcggccagaagctgaccgccggcacgatgaacccgcacgac
gtcctgcggatcatgggtcagcgcgccgtccagatccacctggtggccgaggtccagaag
gtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatcattcggcag
atgctccgccgtgtgacgatcatcgagtcgggcgacgccgagctgctcccgggcgagctc
gtcgagcgcggccgcttcgagaccgagaaccgtcgcgtggtctccgagggcggtcacccc
gcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggcgaccgagtcctgg
ctgtcggccgcctccttccaggagacgacccgagtgctcacggacgcggccatccacgcc
aagtccgacccgctccttggcctcaaggagaacgtcatcctcggtaagctcatcccggcc
ggtacgggtctcccccgctaccgcaacatccgggtcgagccgaccgaggaggccaaggcc
gcgatgtactcggccgtcggctacgacgactacgacctgtcgcccttcagcgccggctcc
ggccaggcagtgccgctggacgactacgactacggcccctacaccggctga
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