Kitasatospora sp. CMC57: KCMC57_up52680
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Entry
KCMC57_up52680 CDS
T11196
Symbol
ligD_3
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kic Kitasatospora sp. CMC57
Pathway
kic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KCMC57_up52680 (ligD_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kic03400
]
KCMC57_up52680 (ligD_3)
Enzymes [BR:
kic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KCMC57_up52680 (ligD_3)
DNA repair and recombination proteins [BR:
kic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KCMC57_up52680 (ligD_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BFV60164
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All DBs
Position
5899448..5900329
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AA seq
293 aa
AA seq
DB search
MPEVTLTEVEGRRLRLTHLEKVLYPETGWTKAAAVHYYANIAPRLLPHLAGRPASFLRFP
EGVQGQRFWAKRVPAGAPDWLSTLDVRHREETLRHVVVADLPTLVWAANLGALELHVPQW
QSDPAEHDRLIIDLDPGPGASIVECCTVALAARRALAADGLTAWAKTSGSKGLHLLVPLR
PTPEDLATGYARHLAMRLRKADPELVVDRMDKSLRRNKVFVDWSQNTSAKTTVAPYSIRA
GDRPMVSTPVSWTAVRDCRRPEELEFTPEQVLGRRRDPMADLADPRHWGQLPG
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaggtgacgttgacggaggtggaggggcggcggctgcggctgacccacctggag
aaggtgctctaccccgagaccggctggaccaaggccgccgccgtgcactactacgcgaac
atcgccccccggttgctgccgcacctggccgggcggcccgcctccttcctgcgcttcccc
gaaggcgtccagggccagcggttctgggccaagcgggtgccggccggagcgccggactgg
ctcagcacgctggacgtccggcaccgcgaggagaccctgcggcacgtggtggtcgcggac
ctgcccaccctggtctgggcggccaacctcggtgccctcgaactgcacgtcccgcagtgg
cagtcggacccggccgagcacgaccgcctgatcatcgacctggacccgggccccggtgcc
tcgatcgtcgaatgctgcacggtcgcactcgccgcccggcgggcgctggccgccgacggg
ctcaccgcctgggcgaagacctcgggctccaagggcctgcacctgctggtgccgctgcgg
cccacgcccgaggacctcgccaccggctacgctcggcacctggcgatgcggctgcggaag
gcggacccggagctggtggtcgaccggatggacaagtcgctgcgccgcaacaaggtcttc
gtcgactggtcgcagaacaccagcgccaagaccaccgtagccccgtactcgatccgggcc
ggggaccgccccatggtctccaccccggtgagctggacggccgttcgggactgtcgtcgc
ccggaggagctggagttcacccccgaacaggtgctgggccgccgccgcgacccgatggcc
gacctggccgatccccggcactggggacagctgcccgggtga
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