Kluyvera intermedia: NCTC12125_01009
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Entry
NCTC12125_01009 CDS
T06042
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
kie
Kluyvera intermedia
Brite
KEGG Orthology (KO) [BR:
kie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kie03016
]
NCTC12125_01009 (rnd)
Enzymes [BR:
kie01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NCTC12125_01009 (rnd)
Transfer RNA biogenesis [BR:
kie03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC12125_01009 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
VDZ82937
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All DBs
Position
1:918060..919175
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AA seq
371 aa
AA seq
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MITTNDALSTLCDAVRQTNAVALDTEFVRTRTYYPQLGLIQLFDGERTALIDPLGITDWS
PLQAIMQDRNITKFLHAGSEDLEVFMNTFGSMPQPLIDTQVLAAFCGRPMSWGFAAMVAE
FTGVELDKSESRTDWLARPLTARQCEYAAADVWYLLPIAHKLMIETEQTGRLAWALDECQ
LMQQRRQEIVDPSDAWRDITNASQLRPRQLACLQLLADWRLRKARDRDMAVNFVVREEHL
WSVARYMPGSLGELDGLGLSGSEIRFHGKTLLSLVEKAQALPEEALPEPLLNLMDMPGYR
KAFKEIKALVQEVGQESGMSAEMLASRRQINQLLNWHWQLKPRTTAPEMISGWRGELLAG
RLDKLLAEYPR
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccaccaacgacgcgctcagcaccctgtgcgacgcggttcgtcagactaacgct
gtggcgctggataccgaatttgtccgtacccgtacctactatccgcagttggggctgatt
cagctgtttgacggcgagcgcacggcgctgattgatcctctgggtattaccgactggtcg
ccgttacaggcgattatgcaagaccgaaatatcaccaaattcctgcacgccggaagtgaa
gatttggaagtctttatgaataccttcggctcgatgccgcagccgcttatcgatacgcag
gtactggcagccttctgcggacgtccgatgtcgtggggctttgccgcaatggtggccgag
tttaccggcgttgagctggataaaagtgaatctcgcaccgactggctggcgcgcccgtta
accgcgcgtcagtgcgaatatgcggcggccgacgtctggtatctgctgccgattgcccac
aaattgatgatagagaccgagcagacagggcgtctcgcctgggcgctggatgaatgccag
ctaatgcagcagcgtcgccaggaaattgtcgacccgagcgatgcgtggcgtgatatcacc
aacgccagccagctccgtccccgccaactggcgtgtctgcaactgttggccgactggcgc
ttacgcaaggcccgtgaccgcgatatggccgtcaactttgtggtgcgtgaagaacacctc
tggagcgtcgcacgttatatgcccgggagccttggcgaactcgatggcctggggttgtca
ggtagcgaaattcgcttccacggtaaaaccttgctgagtctggtggagaaagcacaggcg
cttcctgaagaggcgttacctgaaccgttactgaacctgatggatatgccgggttatcgt
aaagcgtttaaagagattaaagcgctggtgcaagaagtcgggcaggagagcggcatgagt
gctgaaatgctggcctcgcgtcgccagattaatcagctgctgaactggcactggcagtta
aaaccacgcacgaccgcaccggaaatgatttctggctggcgcggcgagctgctggcaggg
cgtctggataagctgttggcagagtacccgcgttaa
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