Kluyvera intermedia: NCTC12125_01215
Help
Entry
NCTC12125_01215 CDS
T06042
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kie
Kluyvera intermedia
Brite
KEGG Orthology (KO) [BR:
kie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kie03019
]
NCTC12125_01215
Enzymes [BR:
kie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC12125_01215
Messenger RNA biogenesis [BR:
kie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC12125_01215
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
T2SSE
nSTAND3
ResIII
nSTAND_NTPase5
NACHT
PhoH
AAA_16
NTPase_1
DUF6145
Motif
Other DBs
NCBI-ProteinID:
VDZ83134
LinkDB
All DBs
Position
1:1105129..1109031
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKITFAMLSQRLETLMLRDKQRFSRRLHGVKKVKNPDAQQAIIQEMAQEIEQAAGK
VLLREASRPVIEYPENLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDVDRDQLQAIFDAVDELGRESAGDILIFMSGE
REIRDTADALNKRDLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELSAITTDEQ
QTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCKLDFLNYLRVREWQDVYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDTDKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRDNAKLRTEIEELE
HKSRRRDILVDDETMFEFYDQRISHDVVSSRHFDKWWKQASRETPDLLNFEKSMLIKEGA
EQVSKLDYPNFWHQGNLKLRLTYQFEPGTDADGVTVHIPLPLLNQVEDAGFEWQIPGLRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLEMPLLDSLERELRRMTGVTVDREAW
QWDQVPDHLKISFRVVDDKNKKLQEGRVLQDLKDALKGKVQETLSAVADDGIEQNGLHIW
SFGDLPERYEQKRGNYKVKAWPALVDERDSVAIKLFDNELEQKQMMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIDEAGGPVWTEAGFNALQEK
VRADLNETVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKSQMSGLVYRGFVTG
NGFRRLGDTLRYLQAIEKRLEKMAVDPHRDRAQMLKVESVQQAWQQWLNKLPPARREDDD
VKEIRWMIEELRVSFFAQQLGTPYPISDKRILQAMEQIVA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaacaaaaaatcaccttcgccatgttaagccagcgtcttgaaacgctgatg
ctgcgggataaacagcgattttcccgccgtttacatggcgttaaaaaggttaaaaatcct
gatgctcaacaagccattattcaggagatggcgcaagaaattgaacaggctgctggtaaa
gtcctgctgcgtgaagcgtcacgcccggtgattgaatacccggaaaacctgccggttagc
cagaagaaacaagacatccttaatgccgtgcgcgaccaccaggtggtgatcgtggcgggg
gaaaccggttcgggtaaaaccacgcagctaccgaaaatctgcatggagttagggcgtggt
attaaaggtcttatcggccacacccagccgcgtcgtctggcggcacgtaccgtggcgaat
cgtattgctgaggagctaaaaaccgagccgggcggctgtatcggttacaaggtgcgtttt
agcgatcacgtcagcgataacaccatggtcaagctgatgaccgacggtatcctgctggct
gaaattcagcaagaccgtctactgatgcagtacgacaccatcattattgatgaagcgcac
gaacgtagcctgaacattgacttcctgctgggctacctgcgagagctattgccgcgtcgg
cccgatctgaaaattatcatcacctcggccaccatcgacccggagcgcttctcgcgccac
tttaataatgcaccgattatcgaagtctccggccggacttacccggttgaagtccgttat
cggccaattgttgaagaggccgacgatgtcgaccgcgatcaactgcaggcgattttcgac
gctgtcgatgaactgggtcgtgaaagcgcgggcgatatcctgatctttatgagtggcgag
cgcgaaattcgtgataccgccgatgcgctgaacaagcgtgacctgcggcataccgaaatt
ctgccgctgtacgccaggctgtcgaacagcgaacagaaccgtgtgttccagtcgcatagc
ggacgccgtattgtgctggcaaccaacgtagctgaaacctcgctgaccgtgccgggtatt
aagtacgtgattgacccgggtaccgcgcgtatcagccgctacagctaccgcaccaaggtg
cagcgtctgccgattgaaccggtctcacaggcttccgccaaccagcgtaaaggccgttgt
ggtcgtgtgtcggaagggatttgcattcgtttgtattccgaagacgacttcctgtcgcgt
ccggaatttaccgaccctgaaattctgcgcaccaacctggcctcagttatcctgcaaatg
acggcgctgggtctgggcgatatcgccgcgttcccgtttgttgaagcgccggataaacgc
aatattcaggacggtgtgcgcctgctcgaagaactgagcgcaattaccaccgacgaacag
caaaccgcttacaaactgacgccaatgggccgccaactcagccaattgccggttgaccca
cgtctggcgcgaatggtgctggaagcgcagaagcacggctgcgtgcgggaagcgatgatc
atcacctcggcgctctccatccaggatccgcgcgagcgcccaatggataaacagcaggcg
tctgatgaaaaacaccgccgcttccacgataaagagtcggacttcctcgcctttgtgaat
ctgtggaactacctgggcgagcagcaaaaagcgctgtcgtcgaaccagttccgtcgccag
tgtaagctcgatttcctcaactatctgcgggtgcgggagtggcaggatgtttacactcaa
ttgcgtcaggtagtgaaagaactgggcattccggtgaacagcgaaccggcggaataccgt
gaaattcacgttgcgttgctgaccggtctgctgtcgcatatcggcatgaaagacacggat
aagcaggaatttaccggcgcccgtaacgcgcgtttctccatcttcccaggctcgggttta
tttaagaaaccgccaaaatggacgatggtggccgaactggtggaaaccagccgcctgtgg
ggacgaatcgccgcacgtatcgacccggaatgggtggagccggtggcgcagcatctgatt
aaacgttcctatagtgaaccgcactgggagcgtgcgcagggcgcggtaatggcgacggaa
aaggtcaccgtttacggactgccgattgtggcggcgcgtaaggtcaactacagccagatt
gacccggcgttgtgccgcgagctgtttatccgccacgcgctggtggagggcgattggcag
acgcgtcatgctttcttccgcgacaacgccaagctgcgtacagaaatcgaagaactggag
cataaatcgcgccgtcgcgacattctggtcgatgacgagacgatgtttgagttttatgac
cagcgcatcagccatgatgtggtttcctcacgccatttcgacaagtggtggaaacaggcc
agccgcgaaacacctgatttgctcaactttgaaaagagcatgttgattaaagaaggggcg
gagcaggtcagtaagctggactacccgaacttctggcatcagggcaatctcaagctgcga
ctgacctatcagttcgagccgggtacggatgcggacggcgtgacggtgcatattccgctg
ccactgctaaatcaggtagaagatgccgggtttgaatggcagattccggggctgcgacgt
gaactgattattgcactgatcaaatcgctgccgaagccggtgcgtcgtaactttgttcct
gcaccgaactatgccgaagctttcctggggcgcgtcacgccgctggaaatgccgttgctt
gactcgctagaacgtgaacttcgccgtatgactggcgtcaccgtagaccgcgaggcctgg
caatgggatcaggtgcccgatcacctgaaaatcagcttccgtgtggttgatgataaaaac
aagaaattgcaggaagggcgtgtattacaggatctgaaagatgcgctgaaaggcaaagtt
caggagacgctgtcggcggtggccgacgacggtatcgaacagaatgggctgcatatctgg
agcttcggcgacctaccggaacgttacgaacaaaagcgcggaaactataaggtgaaagcc
tggcctgcgctggtggatgaacgtgacagcgtggcgattaaactgtttgataacgaactg
gaacagaagcagatgatgtggcgcgggctgcgccgtttgttgttgctgaacatcccatcg
ccgattaaatacctgcacgagaagctgccaaataaagccaagctgggtctgtactttaac
ccgtacggcaaagtgctggatctgattgacgactgtatttcctgcggcgttgacaagctg
attgatgaggctggcggtccggtgtggacagaagcgggctttaatgcgctgcaagaaaaa
gtgcgtgccgacctcaacgaaacggtggtggacattgccaaacaggttgagcagattctg
acggcggtattcaacattaacaaacggctgaaagggcgcgtcgatatgaccatggcgctg
gggctgtcggatatcaaatcgcagatgagcggcctggtttatcgtggttttgtcaccggt
aacggcttccgccgtttgggtgatacgctgcgttacttacaggcgattgagaagcgcctt
gagaaaatggccgtcgacccacatcgcgaccgcgcgcaaatgctgaaggtggagagcgtg
caacaggcgtggcagcagtggctcaacaaactgccgcctgcccgccgtgaagatgacgac
gtgaaggagatccgctggatgattgaagagctgcgcgttagcttctttgctcagcaattg
ggaacgccgtatccgatttcagataagcgtatcttgcaggcgatggagcagatcgtcgcc
taa
DBGET
integrated database retrieval system
