Kluyvera intermedia: NCTC12125_03615
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Entry
NCTC12125_03615 CDS
T06042
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
kie
Kluyvera intermedia
Pathway
kie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12125_03615 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kie03021
]
NCTC12125_03615 (rho)
03019 Messenger RNA biogenesis [BR:
kie03019
]
NCTC12125_03615 (rho)
Transcription machinery [BR:
kie03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NCTC12125_03615 (rho)
Messenger RNA biogenesis [BR:
kie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC12125_03615 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
VDZ85429
LinkDB
All DBs
Position
1:complement(3334300..3335559)
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENSRNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atgggtctggaaaaccaggcacgtatgcgcaagcaggacatcatttttgccatcctgaag
cagcacgcaaagagtggcgaagatatctttggcgacggtgtgctggagatcctgcaggat
ggatttggtttcctccgttcaggagacagctcctacctcgccggtcccgatgatatctac
gtttcccctagccaaatccgccgtttcaacctccgcactggtgacaccatttcgggtaag
atccgtccgccgaaagagggtgagcgttactttgcgctgttgaaagttaacgaagttaac
tacgacaagccggaaaactcgcgtaacaagatcctgttcgagaacttaaccccgctgcac
gcaaactctcgtctgcgtatggaacgtggtaacggttctaccgaagatttaaccgctcgc
gtactggatttggcctcgccaatcggtcgcggccagcgtggtctgattgtggcaccgccg
aaagccggtaaaaccatgctgctgcagaacatcgcgcagagcattgcctacaaccaccca
gactgcgtactgatggttctgctgattgacgaacgtccggaagaagtgaccgagatgcag
cgtctggtgaaaggtgaagtcattgcttctacctttgacgaaccggcatcccgccacgtt
caggttgcggaaatggttatcgagaaagcgaaacgtctggttgaacacaagaaagacgtt
atcatcctgcttgactccattacccgtctggcacgtgcctacaacaccgtggtaccggct
tccggtaaagtactgactggtggtgtggacgccaacgccctgcaccgtccgaagcgtttc
ttcggtgcagcacgtaacgtggaagagggcggcagcctgaccatcatcgcgacggctctg
gtcgataccggctctaaaatggatgaagttatctatgaagagtttaaaggtaccggcaac
atggaactgcacctctctcgtaagattgctgaaaaacgcgtcttcccggctatcgactac
aatcgttccggtacccgtaaagaagagctgctcaccacgcaagaagagctgcagaaaatg
tggatcctgcgcaaaatcatccatccaatgggtgaaatcgacgcgatggaattcctcatc
aataaactggcaatgaccaaaactaacgacgacttcttcgacatgatgaaacgctcgtaa
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