Kluyvera intermedia: NCTC12125_04382
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Entry
NCTC12125_04382 CDS
T06042
Symbol
csrD
Name
(GenBank) Regulator of CsrB and CsrC decay CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
kie
Kluyvera intermedia
Brite
KEGG Orthology (KO) [BR:
kie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kie03019
]
NCTC12125_04382 (csrD)
Messenger RNA biogenesis [BR:
kie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC12125_04382 (csrD)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
Motif
Other DBs
NCBI-ProteinID:
VDZ86159
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All DBs
Position
1:4064391..4066331
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AA seq
646 aa
AA seq
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MRLTTKFSAFFTLLTGLTIFVTLIGSSLSFYNGIQYKIANRVQAVATVLDNRLINTSFDE
LDTQLDEIMVPLDIVRIDFTLDGKSLFHHSRNSSYLPMGSHYQFREMDVPSLKHPGMTIH
LVYQDPMANYFRSLMTTAPLTVTIAFMVLVVFIAVRWLRRQLAGEELLELRAIRILNGER
GAKAKGNIHEWPTRTSSALDTLLSEVQFAGEQRSRLDTLIRSYAAQDSKTGLSNRLFFDN
QLATLLDDQENVGSHGIVMMIRLPDFDFLRDNWGRAAAEEHVFTLINLLSTFIMRYPGAL
LARYRRSDFTVLLPHRTLKEADSIAGQLLKAIDGLPLTKILDRDDMMHIGICAWRSGQTT
EQVMEHAEAAVRNAVLQGSNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRIYQKPAV
TLDGNVHHRDLLCRIFDGKEEVIAAEYLPMVLEFGLGEEYDRQQIGRLIPFLGFWPQENL
AIQVTVESLIRPRFQRWLRDTLMQCEKSQRRRIIFELAEVDVCQHITRLQPVVRLIHALG
VRVAVTQAGLALVSTSWIKQLEIELIKIDPVLVRNIEKRSQNQLLVQSLVEACKGTSIQV
FAAGVRSRGEWQVLTECGVFGGQGDFFAASQPLDSNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaagttctcagcttttttcacgctcttaaccgggctcaccatattt
gtaacgttaatcggttcctcactgagtttttataacggcatacagtacaagatagccaat
cgtgtgcaggccgttgccaccgtgctggataaccgtttaatcaacacctccttcgatgag
ctggatactcagcttgatgaaatcatggtgccgctcgatatcgttcgcatcgactttacg
cttgatggtaagtcgctattccaccactcgcggaacagcagttacctaccgatgggcagc
cattatcagttccgtgagatggatgtcccctcactcaagcaccctggcatgactatccat
ctggtctatcaggatccgatggcaaactacttccgctcgctaatgactaccgccccgttg
accgtgaccattgcttttatggtgctggtggtatttatcgccgtgcgttggctgcgtcga
caattggcgggtgaagagttactggaactgcgcgcgattcgtattctgaatggtgagcgt
ggcgcgaaggcgaaaggtaatatccacgaatggccgacccgtaccagtagtgcgctggat
acgctgctttctgaagttcagttcgccggtgaacagcgcagccgcctcgacacccttatt
cgctcttatgctgcgcaggattcaaaaacgggcctcagtaaccgtctgttctttgataac
cagctcgcgacgctgcttgatgatcaggaaaatgtcggttcgcacggtattgtcatgatg
atccgcctgcctgatttcgacttcctgcgtgacaactggggacgtgcggcggcggaggaa
catgtctttacgctgattaatctgctctccacctttattatgcgctacccgggcgcgttg
ctggcgcgctaccgccgcagtgatttcaccgttttgctcccgcaccgtaccttaaaagag
gcggacagcatcgccggacaattgctaaaagcgatcgatggattgcccctgacgaaaatc
ctcgaccgtgacgacatgatgcatatcggtatttgtgcctggcgaagcgggcagacgacc
gagcaggtgatggagcatgccgaggctgccgtgcgtaacgcggtgcttcagggcagtaat
agctgggcaatctacgatgattcactaccggaaaaaggtcgtggtaacgtccgctggcgc
accctaattgagcagatgcttagccgcggcggcccgcgtatctaccaaaaaccggcggta
acgctcgacggtaacgtgcatcaccgggatctcctgtgccgaatatttgatggtaaagaa
gaggtgattgccgctgaatatctgccgatggtactagagtttgggctgggtgaagaatat
gaccgtcagcagattggtcggctgatcccattccttggattctggccgcaagaaaatctg
gcaattcaggtgacggtagagtcgttgatccgccctcgttttcaacgttggttgcgtgat
actttaatgcagtgcgaaaaatcgcaacgccgacggattatttttgaacttgcagaggta
gatgtctgtcaacatatcactcggttacaaccagtcgtccgattaattcatgcattaggc
gttcgggttgcggtaactcaggcgggtttagccttagtgagtactagctggattaagcag
cttgagattgaactgattaagattgatcctgtgctagtgcgaaatattgaaaaacggagt
caaaaccaactgctggttcaaagtctggtggaagcgtgtaaaggaacgtcaatacaggtt
ttcgcggctggcgtccgcagtcggggtgagtggcaggtgctgactgaatgcggagttttc
ggcggtcagggtgatttttttgccgcctcacagccacttgactcaaatgtgaaaaaatat
tcgcaaagatattcggtttga
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