Kluyvera intermedia: NCTC12125_04421
Help
Entry
NCTC12125_04421 CDS
T06042
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
kie
Kluyvera intermedia
Pathway
kie02020
Two-component system
kie02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kie00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NCTC12125_04421
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC12125_04421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kie03021
]
NCTC12125_04421
Transcription machinery [BR:
kie03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC12125_04421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
VDZ86197
LinkDB
All DBs
Position
1:complement(4108297..4109730)
Genome browser
AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHEEVETQE
PVDTETLDSVDALEKPDMPEELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQSL
QDYLMWQVELTPFTDTDRAIATSIVDAVDDTGYLTVTVEDIHEGIGDDEIGLDEVEAVLK
RIQRFDPVGVAAKDLRDCLLIQLSQFSPDTPRITEARLIISDHLDLLANHDFRSLMRVTR
LKEDVLKEAVDLIQSLDPRPGQSIQTGEPEYVIPDVLVRKVNGHWMVELNSDSIPRLQIN
QHYAGMCNNARNDADSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFDLGEE
HMKPMVLADIAQTVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVSTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTTLLSNQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaattaaggctcagccaacagcttgccatgacgccgcagttgcag
caggcaatccgtctgttgcagttgtctacgttggaacttcagcaggaactccagcaggcg
ctggagagtaaccccctgctcgagcaaaccgatcttcacgaggaagtagaaacccaggaa
cccgtcgataccgaaacgctcgacagcgtagatgcactggaaaagccggacatgccggaa
gaactaccgctcgacgccagttgggatgaaatctacactgccggcacgccatcgggcaac
ggggtcgattaccaagacgacgaactgccggtttaccagggcgaaaccactcagtcactg
caggattacctgatgtggcaggtcgagctgacgccgtttaccgatactgaccgggcgatt
gccacttcgatagtcgatgcggtagacgataccggctatctcaccgttacggtggaagat
atccatgaaggcattggcgatgacgagattggtctcgatgaagtagaggccgtgcttaaa
cggatccaacgattcgatccggtcggcgtcgccgccaaagatctccgcgactgtctgctg
atccaactttctcagttctcacctgatacgccacgcattactgaagcgcgcttaatcatc
agcgatcatctcgatcttctcgccaaccacgactttcgttcacttatgcgcgttacgcgc
ttaaaagaagatgtgctcaaagaagcagtcgatctgattcaatcactcgatccacgtcct
gggcaatcgatccagaccggcgagccggaatatgtgatccctgatgtgctggtgcgcaaa
gtgaacggtcattggatggttgagcttaattccgacagcatcccgcgcctgcagataaac
cagcattatgcggggatgtgcaacaatgcccgcaacgacgctgacagccagttcatccgc
agtaatctgcaggatgctaagtggctgattaaaagccttgagagccgtaatgacacgctg
ttgcgcgtaagccgctgcattgttgagcagcagcaggcctttttcgatcttggcgaagaa
cacatgaaaccgatggtgctggccgatatcgcccagaccgtcgagatgcacgagtccacg
atttcgcgtgttaccacgcagaagtatttgcatagcccacggggcatttttgagcttaag
tatttcttctccagccacgtcagtaccgaaggcggcggcgaagcctcgtccacggccatc
cgtgcgttggtgaagaagttaattgctgcggagaatcccgcaaaaccactgagcgacagt
aaactgaccaccctactctccaatcagggtatcatggtggcccggcgtacggttgcaaag
taccgagagtctttatccatcccgccgtcgaaccagcgtaaacagctggtctga
DBGET
integrated database retrieval system