Kluyvera intermedia: NCTC12125_04463
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Entry
NCTC12125_04463 CDS
T06042
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kie
Kluyvera intermedia
Pathway
kie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12125_04463 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kie03019
]
NCTC12125_04463 (deaD)
03009 Ribosome biogenesis [BR:
kie03009
]
NCTC12125_04463 (deaD)
Enzymes [BR:
kie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12125_04463 (deaD)
Messenger RNA biogenesis [BR:
kie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12125_04463 (deaD)
Ribosome biogenesis [BR:
kie03009
]
Prokaryotic type
rRNA helicases
NCTC12125_04463 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
VDZ86233
LinkDB
All DBs
Position
1:4144607..4146613
Genome browser
AA seq
668 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVGEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWSVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLSIPEVELPNADLLGKRRLEKFAAKVQQQLESSDLDQYRALLAQIKPTAEGEELD
VETLAAALLKMAQGERSLIVPPDAPMRAKREFRERDERFERRNDRNDRNDRGDRNDRGPR
GDRPERSGEDRPKRERREVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL
FGTHSTIELPKGMPGEILQHFTRTRILNKPMNMQLMGDAQPRPGGRGAAGGERREGGRAF
GGERREGGREGGRGFGGERREGGRGDGRRFSGERRDGGNGNRAPRRDDAGAAPRRDDSTG
RRRFGGDA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctggggcttaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccgatccaggctgagtgtatcccacacctg
ctgggcggccgcgatgttctgggtatggcccagaccggtagcggtaaaacagcagcgttc
tctttaccgctgctgaacaaccttgatcctgagctgaaagcaccacagattctggtgctg
gcaccgacccgcgaactagcagttcaggttggtgaggcaatgactgagttctctaaacat
atgcgcggcgtgaacgtggtagccctttacggcggccagcgttatgacgtgcagttacgc
gccctgcgtcaagggccacagattgtcgtcggtactccaggtcgtctgctggaccacctg
aagcgcggtactctggatctctctaaactgagcggtctggtactggacgaagctgacgaa
atgctgcgtatgggctttatcgaagacgttgaaaccatcatggctcagatcccagaaggt
catcagaccgctctgttctctgcaaccatgccggaagcaatccgtcgtattacccgtcgc
tttatgaaagatccgcaggaagtgcgcattcagtctagcgtcacaacccgcccagacatc
agccagagcttctggtctgtctatggcatgcgtaaaaatgaagcgctggtacgtttcctg
gaagcggaagactttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaa
gtggctgaagcactggaacgtagcggttatagcagcgctgcgctgaacggcgacatgaac
cagtctctgcgtgagcagactctggaacgtctgaaagacggtcgtctggacatcctgatc
gcaactgacgttgcagcacgtggtctggacgttgagcgtattagccttgttgttaactac
gacatcccaatggactccgagtcttatgttcaccgtattggccgtaccggtcgtgcgggt
cgtgctggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgcaccatgaagctgtccattccagaagtagaactgcctaacgcagatctgctgggc
aaacgccgtctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctg
gatcagtaccgtgcactgctggctcaaatcaagccaaccgcagaaggcgaagagctggat
gttgaaacgctggccgctgcactgttgaaaatggcacagggcgaacgttccctgatcgtt
ccacctgatgcgccaatgcgtgctaagcgtgaattccgtgagcgtgacgagcgtttcgaa
cgtcgtaacgatcgtaatgaccgtaacgatcgcggcgatcgcaatgaccgtggcccacgt
ggtgaccgtcctgagcgtagcggcgaagaccgtccaaaacgcgaacgtcgtgaagttggc
gatatggaactgtaccgtattgaagtcggccgtgatgatggtgttgaagttcgtcatatc
gttggcgcgatcgctaacgaaggcgatatcagcagccgttacatcggtaacatcaagctg
ttcggtactcactctactatcgaattgccaaaaggtatgccgggcgagatcctgcaacac
tttacgcgtactcgcatcctgaacaagccgatgaacatgcagctgatgggcgatgctcag
ccgcgtcctggtggtcgtggtgctgcgggtggcgaacgtcgtgaaggcggtcgtgcattc
ggtggtgaacgtcgtgaaggcggtcgcgaaggcggtcgtggtttcggcggtgagcgtcgt
gaaggcggccgtggtgatggtcgtcgtttcagcggtgaacgtcgcgacggtggcaatggt
aaccgtgcgccacgccgtgatgatgctggtgctgcaccgcgccgtgacgactctaccggt
cgtcgtcgtttcggcggtgacgcataa
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