Kluyvera intermedia: NCTC12125_04920
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Entry
NCTC12125_04920 CDS
T06042
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
kie
Kluyvera intermedia
Brite
KEGG Orthology (KO) [BR:
kie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
kie03009
]
NCTC12125_04920 (rlmD)
Enzymes [BR:
kie01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NCTC12125_04920 (rlmD)
Ribosome biogenesis [BR:
kie03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NCTC12125_04920 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
MTS
PCMT
Methyltransf_11
RrnaAD
Cons_hypoth95
Methyltransf_ANTKMT
Methyltransf_15
TPMT
Methyltransf_4
Methyltransf_23
PrmA
Motif
Other DBs
NCBI-ProteinID:
VDZ86674
LinkDB
All DBs
Position
1:4577390..4578733
Genome browser
AA seq
447 aa
AA seq
DB search
MGELGQYVFLRKISTMAQFYSAKRRVTTRQIITVIVSDLDPFGQGVARHQGKALFINGLL
PEEKAEITLTEDKKQYARGQVKRRLSSSSERETPRCPHFGVCGGCQQQHASVALQQRSKR
AALNRLMKRETDDVIAGDPWGYRRRARLSLNYQPKTQQLQMGFRKANSNEIIDVVQCPIL
VPDLEALLPVVRECLNSLKGKRQLGHVELVSADNGPLMVLRHTAALTCEDKEKLERFSHS
SGVALYLAPESEILEHVTGEAPWYSSDGLRLTFSPRDFIQVNDGVNQQMVATVLSWLDVQ
LTDRVLDLFCGMGNFTLPLATRAHSVVGVEGVPALVAKGRENAALNQLENVTFFHENLED
DVTLQAWAEHGFDKVLLDPARAGAPGVMQHVIKLAPTRVVYVSCNPATLARDSEVLLSAG
YQIQRLAMLDMFPHTGHQESMVLFERR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
gtgggagaattagggcaatatgtatttttgagaaaaatctctacgatggcgcaattctac
tctgcaaaacgacgcgtgacgacgcgccagatcataaccgtgatagtcagcgacctcgat
ccctttgggcaaggtgtcgccagacatcaaggtaaagcactattcatcaatgggttactg
ccggaggaaaaggcagaaatcactctgactgaagataaaaaacagtatgcgcgcgggcag
gttaaacgccgcctgagcagcagctcagaacgtgaaacgccccgttgtccgcattttggc
gtttgtggtggctgccagcagcaacatgcgtcggttgcactgcaacagcgcagcaagcgc
gcagcactcaatcgtttaatgaagcgtgaaactgacgatgtgattgccggagacccctgg
gggtatcgccgtcgtgcgcggctcagcttgaattatcagccaaagacacaacaattgcag
atgggttttcgcaaagccaattcgaatgaaatcatcgatgtggtgcagtgccctattttg
gtgcccgatcttgaggcgttgctgcccgtcgttcgcgaatgtttaaacagcctgaaaggc
aaacgtcagttaggccatgttgaattggtcagcgctgacaatggcccgctgatggtgcta
cgtcacactgcggcattaacctgcgaagataaagaaaaactggaacgcttttcgcattct
tccggcgtggcgctttatctggcgcctgaaagcgagatacttgaacacgtaaccggtgaa
gcgccatggtattcctcagacggtctacgcttaaccttcagcccgcgcgatttcatccag
gttaacgacggcgtgaatcagcagatggttgcaacagtgttgtcgtggctggatgtacag
ttgaccgaccgagttctggatttgttctgcggcatggggaactttaccttacctctggct
acgcgcgcgcatagcgtcgtcggcgttgaaggcgtaccggcgctggttgcgaaagggcgg
gaaaatgccgcgctgaaccaactggagaatgtcactttcttccacgagaatctggaagat
gatgtcacacttcaggcgtgggcggagcacggttttgacaaagttttactcgatcctgct
cgtgcgggcgcaccgggcgtgatgcagcatgttataaaattagcgccgacgcgggtggtt
tacgtttcctgtaacccggcaacgcttgcgcgcgatagcgaggtgttgttgagtgcgggt
taccaaattcagcgtctggcaatgcttgatatgttcccgcacactgggcatcaggaatct
atggtgctgtttgagcgtaggtaa
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