Kocuria marina subsp. indica: KocCE7_00295
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Entry
KocCE7_00295 CDS
T05866
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
kii
Kocuria marina subsp. indica
Brite
KEGG Orthology (KO) [BR:
kii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kii03016
]
KocCE7_00295 (thpR)
Enzymes [BR:
kii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
KocCE7_00295 (thpR)
Transfer RNA biogenesis [BR:
kii03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
KocCE7_00295 (thpR)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QBJ20478
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Position
75240..75881
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AA seq
213 aa
AA seq
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MRLFAAVHPTRAAREHLVGALREVRELTGTALRWGDPEQWHVTLAFYGEQPEAAVPELGE
LLSDVARDHAPLTVCLRGAGSFSGTTLWMGVGGASDALVELMHACSLDPEERARQRAHLT
VARMSRAERTRKARERRRSSRTVARPGPELAHVVHALSVYEGPAWTVSELSLVSSELGEG
RSGGALHRTVQRFRLSERVASDAPGRMPEEDCR
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgttcgcggctgttcaccccacccgggccgcacgtgagcacctggtcggtgca
ttgcgtgaggtccgtgaactcaccggcaccgcattgcgctggggcgaccccgagcagtgg
cacgtcacccttgcgttctatggcgagcaacccgaggctgcggtgccggagctcggggag
ctgctgagcgacgtcgcccgggaccacgcaccgctcaccgtgtgcttgcgaggcgcggga
tccttctccggcacaaccctgtggatgggcgtgggtggtgcctcggacgcgctcgtggag
ctcatgcacgcgtgctcgctggaccccgaggagcgcgcaagacagcgcgcccacctcacg
gtcgcgcgcatgtcccgcgccgagcgcacgcgcaaggctcgcgaacgacgccgcagttca
cgcaccgtggcgcgccccgggcccgagctcgcgcatgtagtgcacgcgctgtccgtgtac
gaggggcccgcgtggaccgtcagcgagctctccctggtgtcctcagagctcggcgagggc
cgcagcggtggcgccctgcaccgcaccgtgcaacgattccggctgtcggagcgcgtcgcc
tcggacgcccctgggcgtatgcctgaggaagactgccgttga
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