Kocuria marina subsp. indica: KocCE7_03080
Help
Entry
KocCE7_03080 CDS
T05866
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kii
Kocuria marina subsp. indica
Pathway
kii03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kii00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KocCE7_03080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kii03021
]
KocCE7_03080
03400 DNA repair and recombination proteins [BR:
kii03400
]
KocCE7_03080
Enzymes [BR:
kii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KocCE7_03080
Transcription machinery [BR:
kii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KocCE7_03080
DNA repair and recombination proteins [BR:
kii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KocCE7_03080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
NOG1_N
DUF4407
Motif
Other DBs
NCBI-ProteinID:
QBJ20937
LinkDB
All DBs
Position
695353..699243
Genome browser
AA seq
1296 aa
AA seq
DB search
MSNDSSLGLMRIGLATADQIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRYKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEQARHDDLPNLQAAIDREKKQLEDTRDADINAIARDLEND
LARVEEEGGKAAEKRKLRDSADRQMANVRKRADREIDYLEKVWDRFKNLKVNDLEGDEAL
YRQMVDRYGMYFEGSMGAESIKKRLETFDLAAEAEALRETIATGKGQRKTRALKRLKVVN
AFLTTNNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARVLMLSSNNILKPSDGKPIALPSQDMIIGLYHLTTVREGWAGEGN
SYSSVAEAIMAADSGELHLNSRCKIELEDFVPYAGWEAPEGWEQGQPAVVETTLGRVLFN
ETLPADYPWDENVADKKHLSALVNDLAERYPMTQVAKTLDNLKDAGFHWASRSGVTVAIS
DIATPPEKPAIMEGYEAQAARIQGQYDKGLIDDDERRSELIDIWSKATDEVAEAMRNNLT
AGNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIMPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVRESDCQTVRGLTLPLADITDTGVRTLHE
DIENTVHGRVLASAVADENGEVLAESGADMSDAMINKLYNAGVDQVRVRSVLTCESAVGV
CAACYGRSLATNQLVDIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVASSDGDITQGLPRI
QELFEARTPKGVAPISEVAGRIRIEDTDKSLKIVVVPDNGDEEFAYPVLRRAKLLVADGD
HVEVGQQLVTGAVDPKEVLRIRGPREAQKHLVDEVQGVYRSQGVGIHDKHVEVIVRQMLR
RVTIIESGDTSLLPGELVDNVRFLEANRAAVAEGKRPAAGRPELMGITKASLATDSWLSA
ASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLERYNSVDVEPTEEAKASMF
TDPSAFTDFSYAEENAGGLGSEFHAIPLDDYDFGGH
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgattcttcactgggcctcatgcgtatcggcctcgcgaccgcggatcagatc
cgcggctggtcctacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cctgagaaggacggcttgttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggtaagtacaagcgtgtgcgctacaaaggcatcatctgcgagcgctgcggcgtg
gaggtcacgcgcgccaaggtgcgtcgtgagcggatgggtcacatcgagctcgccgctccc
gtgacccacatctggtacttcaagggcgtgccctcgcgcttgggatacctgctggacctc
gccccgaaggacctcgagaaggtcatctatttcgcggcgtacatgatcacgtccgtggac
gagcaggcccgtcacgacgacctgcccaacctacaggccgcgatcgaccgtgagaagaag
cagcttgaggacacccgcgacgcggacatcaacgcgatcgcccgtgacctcgagaacgat
ctcgcgcgcgtcgaggaggagggcggcaaggccgccgagaagcgcaagctgcgtgactcc
gcagaccgtcagatggcgaacgtgcgcaagcgcgccgatcgtgagatcgactacctcgag
aaggtctgggaccgtttcaagaacctcaaggtcaacgacctcgagggtgatgaggccctg
tatcgccagatggtggaccgctacggcatgtacttcgagggttccatgggcgccgagtcc
atcaagaagcgcctcgagaccttcgatctcgccgcggaggccgaggccctgcgcgagacc
atcgccacgggcaagggtcagcgcaagacccgcgccctcaagcgcctcaaggtggtcaac
gcgttcctgaccacgaacaactcgccgctcggcatggtactggacgccgtcccggtgatc
ccgccggaactgcgccccatggtgcagctggacggtggccggttcgcgacgtccgatctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgcctcaagcggctgttggacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtggactcg
ctgttcgacaacggccgccgcggtcgcccggtcacgggccccggcaaccgtgcgttgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctgggcaaa
cgcgtggactactccggtcgttccgtgatcgtggtgggcccgcagctcaagctgcaccag
tgcgggctgcccaagcagatggcgttggagctgttcaagcccttcgtgatgaagcgcctc
gtggacctcaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgctaccgc
ccgcaggtgtgggacgtgttggaagaggtcatcacggagcaccccgtgctgctcaaccgc
gcaccgaccctgcaccgtctgggcatccaggcgttcgagccgcagctcgtggagggcaag
gccatccagctgcacccgctcgtgtgcggcgcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtctccggaggcgcaggccgaggcgcgtgtgctgatgctg
tcctcgaacaacatcctcaagccctcggacggcaagccgatcgccctgccctcgcaggac
atgatcatcggcctgtaccacctcaccaccgtgcgtgagggttgggccggggagggcaac
agctactcctccgtggccgaggccatcatggccgcggactccggtgagctgcacctgaac
tcgcgctgcaagatcgagctcgaggacttcgtgccgtacgccgggtgggaagcgcccgag
ggctgggagcaaggtcagcccgccgtcgtggagaccacgcttggtcgcgtgctgttcaac
gagacgctgcctgccgactacccgtgggacgagaacgtcgcggacaagaagcacctgtcc
gcgctcgtgaacgacctcgcagagcgttaccccatgacccaggtggccaagaccttggac
aacctcaaggacgccggcttccactgggcctcccgatcgggtgtcaccgtggccatctcg
gacatcgccaccccgccggagaagcccgccatcatggagggctacgaggcgcaggccgcg
cggatccagggccagtacgacaagggtctgatcgacgacgacgagcgccgctccgagctc
atcgacatctggtccaaggccaccgatgaggtcgccgaggccatgcgcaacaacctgacc
gccgggaacacgatcaaccggatggtctcctccggtgcacgtggtaactggatgcaggtg
cgtcagatcgcgggtatccgtggtctggtggcgaaccccaagggcgagatcatgccccga
ccgatcaagtcctcctaccgtgagggcctgtccgtgttggagtacttcatcgcgacccac
ggtgcgcgtaagggcctcgcggacaccgctctgcgtaccgccaactcgggttacctgacc
cgtcgactggtggacgtctcgcaggacgtgatcgtgcgagagtccgattgccagacggtg
cgcgggttgaccctgccgctcgcggacatcaccgacaccggtgtgcgcacgctgcacgag
gacatcgagaacacggtgcacggccgcgtgctggccagcgccgtggcggacgagaacggc
gaagtgcttgccgagtcgggcgcggacatgtccgacgccatgatcaacaagctctacaac
gccggtgtggaccaggtgcgcgtgcgctcggtcctcacgtgcgagtccgccgtgggcgtg
tgcgccgcgtgctacggccgttcgctggccaccaaccagttggtggacatcggcgaggct
gtgggcatcgtggccgcccagtccatcggtgagcccggtacccagctgaccatgcgtacg
ttccacaccggtggtgtggcgtcctcggacggtgacatcacgcagggtctgccccgtatc
caggagctgttcgaggcccgcacgcccaagggcgtggccccaatctccgaggtggccggc
cggatccgcatcgaggacacggacaagtcgctgaagatcgtggtggtcccggacaacggt
gacgaggagttcgcctacccggtgctgcgccgcgccaagctgctcgtcgcggacggcgat
cacgtggaggtcggtcagcagctcgtgaccggtgccgtggaccccaaggaggtactgcgt
atccgcggtcctcgtgaggcgcagaagcacctcgtggatgaggtccagggcgtgtaccgc
tcccagggcgtgggcatccacgacaagcacgtggaggtcatcgtgcgccagatgctgcgg
cgcgtgaccatcatcgagtccggcgacacctcgttgctgccgggtgagctggtggacaac
gtgcgcttcctcgaggccaaccgcgccgcggtggcggagggcaagcgtcccgcggccggg
cgtccggagctcatgggcatcaccaaggcctccctggccacggactcgtggctgtccgcc
gcgtccttccaggagaccacccgtgtgctcacgcaggccgccatggagggcaagtcggat
ccgcttctgggtctgaaggagaacgtgatcatcggtaagctcatccccgccggtaccggt
ctggagcggtacaacagcgtggacgtggagcccaccgaggaggccaaggcctccatgttc
acggatccctccgcgttcaccgatttcagctacgccgaggagaacgccggggggctcggt
tccgagttccatgcgatccccctggacgactacgatttcggcggtcactga
DBGET
integrated database retrieval system
