Kocuria marina subsp. indica: KocCE7_04760
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Entry
KocCE7_04760 CDS
T05866
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kii
Kocuria marina subsp. indica
Brite
KEGG Orthology (KO) [BR:
kii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kii03019
]
KocCE7_04760 (hrpA)
Enzymes [BR:
kii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KocCE7_04760 (hrpA)
Messenger RNA biogenesis [BR:
kii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KocCE7_04760 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_23
ABC_tran
T2SSE
PhoH
NACHT
Motif
Other DBs
NCBI-ProteinID:
QBJ21226
LinkDB
All DBs
Position
complement(1060429..1064556)
Genome browser
AA seq
1375 aa
AA seq
DB search
MTEPRIQPRIVYPDDLPVSARREDIMAAIRDHQVVVIAGETGSGKTTQLPKMCLELGLGD
GGLIGHTQPRRIAARSVAERIAHELGQRVGDTVGYQVRFTSEVGKDSRIKLMTDGILLAE
IGHDPQLSRYNAIIIDEAHERSLNIDFLLGYLKRLLPQRPDLKVVITSATIDPQRFAEHF
VLADPQHPDADPEPAPIIEVSGRTYPVEIRYRPLAQERSGDGGEDEDNTGDGLVDEDRDP
IDAVCDAVVELSREPRGDILVFFAGEREIRDAQDALHKVIDSHRSLAGTQILPLFGRLSM
AEQNRVFAPSSHRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSARTKVQRLPIERIS
QASARQRAGRSGRTSDGVCIRLYSEEDFESRPEYTDPEILRTNLAAVILQMISVGVVEQP
HDITQFPFVQKPDARAVKDGVVLLRELGALRSGAADAGDDAASSSARDGHRGRRSRSGRH
RGRQSGPRGPLTRTGEVLAALPVDPRLGRMIVESQRRGCVREVLVLTAALTVQDPRERPL
EKRQAADEFHARFRDKTSDFLSYGLLWQYLQEQQSELSSSQFRKLCRREYLNFLRIREWQ
DLYAQLRQIARQVGIDAGASREIDVASHQEAVHKSLLSGLLSNIGVRDERTREYRGARGT
KFAIFPGSALFKTSPDWLVSAELVETSRLWARTNAAIKPEWAEEIAPQLVKRSYSEPHWS
RSRGAVMAYEKVTLYGLPVVSERPVLFSRIDPELSRELFIRHALVEGDWQTRHTFVKRNR
KALAQVEELENRMRRKDLRVDDQVLFDFYDARVPADVVSQRHFDAWWKKARQRDEHLLDL
TPEDLIAPEVAELDTASFPRSWTVASPDGELSLDLDYEFAPGAETADGVTVRVPVLFLDR
LAPEQFEWHIPGLRVELVTALIKSLPKAVRRNFVPAPDTAVTAVKHLDAEFDPARDSLLE
SLATVLRRLRGHPVQASDFHPEALPAHLRMRFEVRDARNSVLGRGDDLTELKQRLRPKVR
AALAESLGGAAAQLYDAARGSTEGSASSGDDAAAARRGRGKRGSARPVPGTSPGSGAPRA
ASLERTDLTAWPEPDPPRRVETTVAGQTVTGYPTLVAVRDTDASQPPRVDLRILSDAEEQ
RAAQRDGVIALLHRTLPSVHRYVVDHLSQKERLIFTQNPHGSVEALITDCTIAAIDRLVP
EEPPFTRDQFRAVAEHVRAELIDTVFAVTALVTTALTESNTVRKRLKKPGSLGAVAAFKD
MSEQLSRLIHPGFVARTGWRALQHVPRYLAGINVRLDKLSGHLQRDAVAMQTVHDLEAEY
RAAVDAVPSTVPTPAALRAVRWDLEELRISFFAQELGTAHTVSEKRIRKRLRELG
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgactgagccccgcatccagccccgcatcgtgtacccggacgacctccccgtcagcgcg
cgccgggaggacattatggccgcgatccgcgatcaccaggtcgtggtgatcgcgggtgag
accggttccggcaagaccacccagctgcccaagatgtgtctggagctgggtctgggggac
ggcggtctgatcggtcacacccagccgcgcaggattgcggcgcgttcggtggccgagcgc
atcgcccatgaactcgggcagcgcgtgggcgacaccgtgggctaccaggtgcgcttcacg
tccgaggtgggcaaggactcgcggatcaagctcatgacggacggcatcctgctggccgag
atcggccacgacccgcagctgtcgcgctacaacgcgatcatcatcgacgaggcccacgag
cgctccctcaacatcgacttcctgctgggctacctcaagcgactgctcccccagcgcccg
gacctgaaggtcgtcatcacgtccgcgacgatcgacccgcaacgcttcgccgagcacttc
gtgctggcggacccgcagcacccggacgccgatccagagcccgccccgatcatcgaggtc
tccgggcgcacctaccccgtggagatccgctaccgaccactggcccaggagcgcagcggg
gacggcggcgaggacgaggacaacaccggcgacgggctcgtggacgaggaccgcgacccg
atcgacgccgtgtgcgacgccgtcgtggaactctcgcgcgaaccccgcggggacatcctc
gtgttcttcgcgggcgagcgtgagatccgggacgcccaggacgcgctgcacaaggtcatc
gactcgcaccgctccctggccgggacccagatcctgccgctgttcgggcggctgtccatg
gccgaacagaaccgcgtgttcgcgccgtcctcgcaccgccggatcgtgctcgcgaccaac
gtggccgagacctcgctcacggtcccgggcatcaagtacgtgatcgacccgggcaccgcc
cggatctcccggtactcggcgcgcaccaaggtccagcgcctgcccatcgagcgcatctcc
caggcgtcggcgcggcagcgcgcggggcgctcggggcgtacgtccgacggcgtgtgcatc
cggttgtactccgaggaggacttcgagtcccggccggagtacacggacccggagatcctg
cgcacgaacctcgctgcggtcatcctgcagatgatctcggtgggcgtggtggagcaaccc
cacgacatcacccagttcccgttcgtgcagaaacccgatgcgcgcgcggtcaaggacggc
gtggtgctgctgcgcgaactcggtgccctgcgctcgggcgcggcggacgcgggcgacgac
gcggcgtcgtcgtccgcgcgtgacgggcaccgggggcggcgctcgcggtccgggcgccac
cgcggtcggcagagcggaccgcggggtccgctgacccgcacgggcgaggtgctcgccgcg
ctgccggtggacccgcgactgggccggatgatcgtggagtcgcagcgccgggggtgcgtg
cgcgaggtgctcgtgctcacggccgcgctcacggtgcaggacccgcgggaacgcccgctc
gagaagcgccaggcggcggacgagttccacgcgcgcttccgcgacaagacctccgacttc
ctgtcctacggtctgctgtggcagtacctgcaggagcagcagagcgagctgtcctcgtcc
cagttccgcaagctgtgccgacgcgagtacctgaacttcctgcggatccgcgagtggcag
gacctctacgcgcagttgcgacagatcgcacgccaggtggggatcgatgccggggcgtcc
cgggagatcgacgtcgcctcgcaccaggaggccgtgcacaagagcctgctgtccgggctg
ctgagcaacatcggcgtgcgggacgaacgcacgcgcgagtaccgcggcgcgcgcgggacc
aagttcgcgatcttcccgggctcggccctgttcaagacgtccccggactggctcgtgtcc
gcggagctcgtggagacctcccgattgtgggcgcgcaccaacgcggcgatcaagcccgag
tgggccgaggagatcgcgccgcagctcgtcaagcgcagctactctgaaccccactggtcc
cgttcccgcggagccgtgatggcgtacgagaaggtcacgctctacgggctgcccgtggtg
tccgagcggcccgtgttgttctcccggatcgatcccgaactctcccgggaactgttcatc
cgccacgcgctcgtggagggcgactggcagacccgccacacgttcgtcaagcgcaatcgc
aaggccctggcccaggtcgaggagctcgagaaccgcatgcgccgcaaggacctgcgcgtg
gacgaccaggtgctgttcgacttctacgacgcgcgcgtgcccgcggacgtggtctcccag
cggcatttcgatgcgtggtggaagaaggcccgccagcgggacgagcacctgctggacctc
actcccgaggacctgatcgcgcccgaggtcgcggagctggacacggcctccttcccgcgg
tcctggaccgtggcatccccggacggcgagctgagtctggacctggactacgaattcgcg
cccggggcggagaccgcggacggcgtcacggtgcgggttcccgtgctgttcctggaccgc
ctggcccccgagcagttcgaatggcacatccccgggctgcgtgtggagctcgtgaccgcg
ctgatcaaatcgctgcccaaggccgtgcggcgcaacttcgtgcccgccccggacaccgcc
gtcaccgccgtgaagcacctggacgccgagttcgatccggcccgcgattctctcctggag
tccctggccaccgttctgcggcggttgcggggccaccccgtccaggcctcggacttccac
ccggaagccctgcccgcccacctgcgcatgcgcttcgaggtgcgcgacgcccgcaactcg
gtactgggccggggcgacgacctcacggagctcaaacagcggttgcggcccaaggtccgc
gcggcgctcgccgagtccctcgggggcgctgcggcccagctgtacgacgccgctcggggc
agcaccgagggttcggcctcctccggtgacgacgccgccgcggcccgtcgcggtcgcggc
aagcggggctcggcgcgaccggtcccagggacttcccccggatccggcgcaccccgggcc
gcctcgctggaacgcaccgacctcacggcgtggcccgaacccgatcctccgcgccgcgtg
gagacgaccgtggcgggtcagacggtcacgggataccccacactcgtggcggtgcgggac
accgatgcttcgcagccaccccgcgtggacctgcggatcctgagcgacgcggaggaacag
cgcgccgcgcaacgcgacggcgtgatcgccctgctgcaccggaccctgccgtccgtgcac
cgctatgtggtggaccacctgagccagaaggaacggttgatcttcacccagaacccccac
ggttcggtcgaggcgctcatcaccgattgcacgatcgccgcgatcgaccggctggtaccc
gaggagccgccgttcacgcgggaccagttccgggcggtcgcagagcacgtacgcgccgag
ctgatcgacacggtcttcgccgtcaccgcgctcgtgaccaccgcgctcaccgagtccaac
accgtgcgcaaacggttgaagaaacccgggtcactcggggcggtcgccgcgttcaaggac
atgtccgagcagctctcccgcttgatccatcccggcttcgtggcccgcaccgggtggcgg
gccctgcagcacgtgccgcgctacctcgcggggatcaacgtgcgcctggacaaactctcc
ggccatctgcagcgggacgccgtggccatgcagaccgtgcacgatctcgaggccgagtac
cgcgccgcggtggacgccgtcccctcgaccgtacccacgcccgctgcgctgcgggccgtg
cgctgggacctcgaggaactgcgcatttcgttcttcgcgcaggaactgggcaccgcgcac
acggtgtcggagaagcggatccgcaagcggttgcgcgagctcggctga
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