Kocuria marina subsp. indica: KocCE7_04815
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Entry
KocCE7_04815 CDS
T05866
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
kii
Kocuria marina subsp. indica
Pathway
kii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KocCE7_04815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kii03021
]
KocCE7_04815
03019 Messenger RNA biogenesis [BR:
kii03019
]
KocCE7_04815
Transcription machinery [BR:
kii03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KocCE7_04815
Messenger RNA biogenesis [BR:
kii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KocCE7_04815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
PIP5K
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
QBJ21235
LinkDB
All DBs
Position
1075359..1077485
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AA seq
708 aa
AA seq
DB search
MTETTAPEQGTDTSNAQSTGLSGLKLAQLQALAAQLGITGARRMRKSLLVEAIEAHQRGG
AVAERDKAVEAKIEQTARKASQRHSSDAPRSSSADDAPAAASADAASSDSSSKPQEGSEG
ENGEQNVPRQSGSRRSRRATASGTGEHGRSGQDRSAQNQQDKDQAEKGRDESGQDSAQGS
DDSGNESGRGQRNQRGRRNEKSEQNGSSQDENRRENKQGQLDGSRHANHQKDSKDNGQDR
DNRRDSKGQGGSNDSGDPKDGGQDNQNRNDRRNRNNNDRNNDGEGNSRRNRRNRNRNDRN
DRNDRNERRNRRNRHNGPDVDDVEITEDDVLLPVAGILDVLDNYAFVRTSGYLPGPSDVY
VSLSQVKKNNLRKGDAIVGAIRAPREGEQHNNSRQKFSALVQLTTVNGRKPEENKDRVEF
NKLVPLYPQERLRLETEPKKIGPRVVDLVAPIGKGQRGLIVSPPKAGKTLMLQSIANAIT
TNNPEVHLMMVLVDERPEEVTDMQRTVKGEVIASTFDRPADDHTTVAELAIERAKRLVEM
GMDVVVLLDSMTRLGRAYNLSAPASGRILSGGVDSAALYPPKKFFGAARNIENGGSLTIL
ATALVETGSKMDEVIFEEFKGTGNMELRLSRQLADRRIFPAVDVNSSGTRREENLLSADE
IKIMWRLRRVLSGLEQQQALELLTSKLRDTQSNTEFLLQVQKTTLAGH
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaaaccaccgcccccgaacagggaacggacacctcgaacgcccagagcaccggt
ctgtccgggctcaaactcgcgcagctgcaggccctcgcggcccagttgggcattaccggc
gcgcgccgcatgcgcaagtccctgctggtcgaggccatcgaggcccaccagcgcgggggc
gccgtcgccgagcgcgacaaagccgtggaggccaagatcgagcagaccgctcgcaaggcc
tcccagcgccactcctccgacgctccgcggtcgtcctccgccgacgacgctccggccgcc
gcgtccgcggacgcggcgtcatcggactcctcctcgaagccccaggagggctcggagggc
gagaacggcgaacagaacgtcccgcggcagagcggttcgcgccgttcccggcgcgccacg
gccagcggcaccggtgagcacgggcgctccggccaggaccgttccgcccagaaccagcag
gacaaggaccaggcggagaagggccgggacgagtccgggcaggactccgcccagggctct
gacgactccggcaacgagtccgggcgcggccagcgcaaccagcgcggtcgccggaacgag
aagtccgagcagaacggctcgtcccaggacgagaaccggcgcgagaacaagcagggtcag
ttggacggttcccgccacgccaaccaccagaaggattccaaggacaacggtcaggaccgg
gacaaccgccgtgactccaagggccaaggcggttccaacgattccggtgaccccaaggac
ggcggtcaggacaaccagaaccgcaacgaccggcgcaaccgcaacaacaacgatcgcaac
aacgacggtgagggtaactcccgccgcaaccggcgcaaccgcaatcgcaacgaccgtaac
gatcgaaacgaccgcaacgagcggcgcaaccggcgcaaccggcacaacggtccggacgtg
gacgacgtcgagatcaccgaggacgacgtcctgctgcccgtggcgggcatcctggacgtg
ctcgacaactacgcgttcgtgcgcacctcgggctacctgcccggcccctcggacgtgtac
gtgagcctgtcccaggtcaagaagaacaacctgcgcaagggcgacgcgatcgtgggcgcc
atccgtgctccccgcgagggcgaacaacacaacaactcgcgccagaagttctccgcgctc
gtgcagctgaccacggtcaacggccgcaagcccgaggagaacaaggaccgggtcgagttc
aacaagctcgtcccgctgtacccccaggagcggctgcgcctggagaccgagcccaagaag
atcggtccccgcgtggtggatctcgtggccccgatcggcaagggccagcgcggtctgatc
gtctccccgcccaaggccggtaagacgctcatgctgcagtcgatcgccaacgcgatcacg
accaacaaccccgaggtccacctcatgatggtgctcgtggacgagcgccccgaagaggtc
acggacatgcagcgcacggtcaagggtgaggtcatcgcctcgaccttcgaccggcctgcg
gacgaccacaccacggtcgcggagctcgcgatcgagcgggccaagcgcctggtggagatg
ggcatggacgtggtggtcctgctggactccatgacccgcctgggccgcgcgtacaacctc
tcggcaccggcgtccggccgcatcctctccggtggtgtggactccgccgcgctgtacccg
cccaagaagttcttcggcgccgcgcgcaacatcgagaacggtggctcgctgaccatcctc
gcgaccgcgctcgtggagaccgggtccaagatggacgaggtcatcttcgaggagttcaag
ggcacgggcaacatggaactgcgcctgtcccgccagctcgcggaccggcggatcttcccg
gccgtggacgtcaattcctccggtacccgccgtgaggagaacctgctgtccgcagacgag
atcaagatcatgtggcggctgcgccgcgtgctctccggtctggaacagcagcaggccctg
gaactgctcacgagcaagctgcgggatacccagtccaacaccgagttcctgctgcaggtc
cagaagaccacgctggccggtcactag
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