Kocuria marina subsp. indica: KocCE7_07540
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Entry
KocCE7_07540 CDS
T05866
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
kii
Kocuria marina subsp. indica
Brite
KEGG Orthology (KO) [BR:
kii00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KocCE7_07540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kii03021
]
KocCE7_07540
Transcription machinery [BR:
kii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KocCE7_07540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HC2
CDC27
Motif
Other DBs
NCBI-ProteinID:
QBJ22651
LinkDB
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Position
complement(1692465..1694105)
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AA seq
546 aa
AA seq
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MSNERFSVSPAASKTASASQASTEQTDPAETTSQAGTGGASTSGAAKKPAVKRAAAAKKT
VARKSTAAKKTASATRGTAAASSQTTAATSDAGASNESDTAAPAAKKTATRKTAAKKSAA
TKTAATKSTTRTKTAADSAEGTAKSAGTRKTTKTAAKPAAKAPAGGRGRKKADPVEEALA
EDELVPEDTPEDLEEEDTQESQQASVEESAPLMKGRQDKSARGFVLTNNDDDDAPAQQVV
VAGATADPVKDYLKQIGKVALLNAEQEVDLALRIEAGLYAEHKFADEQDSMDADTRRAYR
WVIHDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFK
FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELANE
LDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHS
VLDTLSEREAGVVAMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQV
LRDYLD
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
ctgtccaacgaaaggttctccgtgtcaccagctgccagcaagaccgcgtccgcttctcag
gcctccacggagcagacggaccccgctgagaccacttctcaggcaggcacgggcggcgct
agcacgagtggcgctgccaagaagcccgccgtgaagagggccgccgcggccaagaagact
gtggcgcgcaagagcaccgccgctaagaagaccgcttccgccacgcgggggaccgccgcg
gcgtcgtcgcagaccaccgctgccacatcggacgcgggggcgtcgaacgagtcagacacc
gccgcccccgcggcgaagaagaccgccacccggaagaccgccgccaagaagtcggccgcg
accaagaccgcggcgaccaagtccacgacccgcaccaagaccgccgcggactccgcggag
ggcaccgccaagtccgcgggcacccgcaagaccaccaaaaccgccgcgaagcccgccgcc
aaggcccccgcgggcggacgcggtcggaagaaggcggatcccgttgaggaggcgctcgcc
gaggacgaattggtgcccgaggacaccccggaggacctcgaggaggaggacacccaggag
tcccagcaggcctcagtggaggaatcggccccgctcatgaagggccgccaggacaagagt
gcgcgcggcttcgtgctgaccaacaacgacgacgacgacgctcccgctcagcaggtggtc
gtcgccggtgccaccgcggaccccgtcaaggactacctcaagcagatcggaaaggtcgcg
ctgctcaacgcggagcaggaggtggacctggccctgcgcatcgaggccgggctgtacgcc
gagcacaagttcgcggacgaacaggactccatggacgcggacacccgccgcgcctaccgc
tgggtgatccacgacggccgccgcgccaagaaccacctgctcgaggccaacctgcgcctc
gtggtgtccctggccaagcgctacacgggccgcggcatgctgttcctggacctgattcag
gagggcaacctgggcctgatccgcgcggtcgagaagttcgactacaccaagggcttcaag
ttctccacgtacgccacgtggtggatccgccaggccatcactcgcgccatggcggaccag
gcccgcaccatccgcatcccggtgcacatggtcgaggtcatcaacaagctggcccgcgtg
cagcgccagatgctgcaggacctggggcgcgaacccaccccggaggagctcgccaacgag
ctcgacatgaccccggagaaggtcgtggaggtccagaagtacggtcgcgagcccatttcg
ttgcacacgccgctcggtgaggacggtgactccgagttcggcgacctgatcgaggattcc
gaggccgtggtccccgcggacgccgtgtccttcacgctgctgcaggagcagttgcactcg
gtgctggacacgctctccgaacgcgaggccggcgtggtggccatgcgcttcgggctcacg
gacggtcagcccaagaccctggacgaaatcgggaaggtctacggcgtcacccgtgagcgg
attcgccagatagagtccaagaccatgtccaagctgcgtcacccgtcccgctcgcaggtg
ctgcgggactacctggactga
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