Kocuria marina subsp. indica: KocCE7_08650
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Entry
KocCE7_08650 CDS
T05866
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
kii
Kocuria marina subsp. indica
Pathway
kii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KocCE7_08650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kii03019
]
KocCE7_08650
03016 Transfer RNA biogenesis [BR:
kii03016
]
KocCE7_08650
Enzymes [BR:
kii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KocCE7_08650
Messenger RNA biogenesis [BR:
kii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KocCE7_08650
Transfer RNA biogenesis [BR:
kii03016
]
Prokaryotic type
tRNA degradation factors
KocCE7_08650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_2
S1_RRP5
PCB_OB
RNase_PH_C
KH_KhpA-B
aRib
Motif
Other DBs
NCBI-ProteinID:
QBJ21863
LinkDB
All DBs
Position
complement(1925078..1927336)
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AA seq
752 aa
AA seq
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MEGPEIQSAEAVIDNGSYGKRVVRFETGRLARQAAGSAMVYIDEETSMLSATAVGKHPRE
GFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPAFGKGLRNEVQ
VVVTVTSIAPDEIYNTVAINAASMSTTLSGLPFQGPVGGVRMALMAQENGSHQWIAFPKH
SQLENAVFDMAVAGRVVSTKDGGSDVAIMMVEAEATDNAWELIKGQGAVAPTEELVAEGL
EASKPFIKALCDAQADLASRTAKPELDLPRFGGYEDDAAEAVKDFVGERMAEVYSIAGKQ
EREAATDELHQSTLAELTGEGKAFEGRADEVNGAYQALTKQTVRQRILKDKVRIDGRGLT
DIRQLSAEVDVLPRVHGSALFERGETQIMGVTTLNMLKLEQQIDSLSPVKHKRYIHHYNF
PPYSTGETGRVGSPKRREIGHGALAERAITPVLPSREEFPYAIRQVSEALGSNGSTSMGS
VCASTLSLYNAGVPLRAPVAGIAMGLVSDTVNGEVQYAALTDILGAEDALGDMDFKVAGT
SEFVTAIQLDTKLDGIPASVLASALTQAREARLYILDVLTSAIDAPDEMSEFAPRVISVN
VPVSKIGEVIGPKGKMINQIQEDTGTDISIEDDGTVYIGATDGPSAEAARSAINAIANPQ
VPEVGERYLGTVVKTTTFGAFVSLTPGKDGLLHISEMRKLNDNKRVNEVDDVVSVGQKVQ
VEITKVDDRGKLSLAPVVAESEAPAESSDDEN
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
ttggagggtcccgaaatccagagtgcagaagccgttatcgacaacggttcgtacggcaag
cgcgtcgtgcgcttcgaaaccggccgactcgcccgccaggccgcgggttcggccatggtc
tacatcgacgaagagacctccatgctctcggccacggccgtgggcaagcacccgcgggag
ggcttcgacttcttcccgctcacggtggacgtcgaggagcggatgtacgccgcgggtcgc
atccccggttcgttcttccgccgtgagggtcgcccgtccacggacgcgatcctcacgtgc
cgtctgatcgaccgcccgctgcgccccgcgttcggcaagggcctgcgcaacgaggtgcag
gtggtcgtgaccgtcacgtccatcgccccggacgagatctacaacaccgtggcgatcaac
gccgcgtccatgtccacgaccctgtccgggctgcccttccagggccccgtgggcggcgtg
cgcatggcgctcatggcccaggagaacggttcccatcagtggatcgcgttccccaagcac
tcgcagctggagaacgccgtgttcgacatggccgtggccggccgcgtggtgagcaccaag
gacggcggctcggacgtcgcgatcatgatggtcgaggccgaggccaccgacaacgcctgg
gagctcatcaagggccagggcgcggtcgcaccgaccgaggagctcgtggccgagggcctc
gaggcctccaagccgttcatcaaggccctgtgcgacgcccaggcggatctcgcctcccgc
accgccaagcccgagctggacctgcctcgcttcggcgggtacgaggacgacgccgccgag
gccgtcaaggacttcgtgggcgagcgcatggcggaggtctactcgatcgccggcaagcag
gagcgcgaggccgcgaccgacgaactgcaccagtccacgctggccgagctcacgggcgag
ggcaaggccttcgagggccgcgcggacgaggtcaacggtgcctaccaggccctgaccaag
cagaccgtgcgccagcgcatcctcaaggacaaggtgcgcatcgacggccgcggtctcacg
gacattcgtcagctcagcgccgaggtggacgtgctcccgcgcgtgcacggttccgcgctg
ttcgagcgcggcgagacccagatcatgggtgtcaccacgctgaacatgctcaagctggag
cagcagatcgactcgctgtccccggtcaagcacaagcgttacatccaccactacaacttc
cctccgtactccacgggtgagaccggccgcgtgggttcgcccaagcgccgcgagatcggt
cacggcgcgctcgccgagcgtgcgatcacgcccgtgctgccctcccgggaggagtttccg
tacgcgatccgtcaggtctccgaggcgctgggctccaacggctccacgtccatgggttcc
gtgtgcgcgtccacgctgtcgctgtacaacgccggtgtgccgctgcgcgctcccgtggcc
ggtatcgccatgggcctggtctccgacaccgtcaacggcgaggtccagtacgcggccctg
accgacatcctcggtgcggaggacgcgctgggtgatatggacttcaaggtcgccggcacg
tccgagttcgtgaccgcgatccagctggacaccaagctggacggtatccccgcctcggtc
ctggcctcggccctgacccaggcccgcgaggcccggctctacatcctggacgtgctgacc
tccgcgatcgacgccccggacgagatgagcgagttcgcgccgcgcgtgatctcggtgaac
gtgcccgtgtccaagattggtgaggtgatcggccccaagggcaagatgatcaaccagatc
caggaggacaccggcaccgacatctccatcgaggacgacggcaccgtgtacatcggcgcc
acggacggcccctccgcggaggccgcgcgctcggcgatcaacgcgatcgccaacccgcag
gtccccgaggtgggcgagcgctacctgggcaccgtggtcaagaccaccacgttcggtgcg
ttcgtgtccctgaccccgggcaaggatggtctgctccacatctccgagatgcgcaagctc
aacgacaacaagcgcgtcaacgaggtcgacgacgtcgtgtccgtgggccagaaggtccag
gtggagatcaccaaggtggacgaccgcggcaagctgtccctcgcgcccgtcgtggccgag
tccgaggccccggccgagtcctccgacgacgagaactga
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