Kocuria indica: KocCE7_09175
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Entry
KocCE7_09175 CDS
T05866
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kii
Kocuria indica
Pathway
kii03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KocCE7_09175 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kii03400
]
KocCE7_09175 (mfd)
Enzymes [BR:
kii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KocCE7_09175 (mfd)
DNA repair and recombination proteins [BR:
kii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KocCE7_09175 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBJ21945
UniProt:
A0A4V0ZR50
LinkDB
All DBs
Position
complement(2036796..2040554)
Genome browser
AA seq
1252 aa
AA seq
DB search
MSLTGLLTALSEDRSFANIRAQAARPLTERSAETIISATDGLRAPVLAQIARGLADGAGA
ASSSDGAKGGSSGSTPILLAVTATGREAEELQSGLESYVPAEQIANFPSWETLPHERLSP
RSDTVGQRLSVLRRLDHVQDGEQPLRVVVAPVRSVLQPVVAGLGAMKPVTLRTGQEYDFQ
QLVARLAGAAYSRVDMVTRRGEFAVRGGIIDVFPPTEDHPVRAEFFGDELDEMRWFAVAD
QRTLTDAEHPSVIVAPPCRELLITPSVQSRAAKLKEQLPGGREILERIAGGQYVEGMESL
APLLADEMVQLMSLLPEGSMTVVLEPEKVRARAHDLVATNQEFLTAAWESASGGNDAPLD
LHAALDADDGASRTPAAGSFHTVGEVRELALDRSVGWWSVTGLNVNAVTTSQIDADTADE
EVRLADTDADTLTVTAREPTRFSGDVEAMLRFLGERMHDDWRVVLVTDGPGPLQRLSELL
HGAEIPAARCDSLTEVPRAGLVELTTARAGRGFVIESTRTALLTEADVLGRSTAYDNRAQ
RKLPQRRKRNQVDPLALQKGDYVVHEQHGIGQFIELVQRPIAGAMTAPGQPKPVREYLVL
EYAPSKRNGPRDRLFVPTEQLDQVSTYVGGEAPSLSKMGGADWNKTKRSAKKAVKEIANE
LIRLYSARMASKGYAFGPDTPWQRELEQAFPYVETPDQLTTIDEVKADMERPIPMDRLIS
GDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHTETFAERFSGFPVRLATLSRFQ
SAKESKATLEGLRSGAIDVVVGTHRLLSKETQFKNLGLVIIDEEQRFGVEHKEKLKAMRT
DVDVLAMSATPIPRTLEMSMTGIRETSTLATPPEERHPVLTYAGPYTDKQVSAAIRRELM
REGQVFFIHNRVSSIEAQAKALAELVPEARIAVAHGQMSESRLEQIIVDFWEKKFDVLVC
TTIVETGLDIANANTLIVDHADRYGLSQLHQLRGRVGRGRERAYAYFLYPTEKPLSETAL
ERLKAVAAHNELGSGLQLAMKDLEIRGAGNLLGGEQSGHIAGVGFDMYLRLVGEAVAEYR
GDQDTGPAEMKIELPVNAHLPHDYVPGERLRLEAYRTIANAATEEAVAEAGEELKDRYGP
LPTPVENLLDVARLRIRARAAGLTDVATQGTMIRFSPAELTESREMRLTRMYPGAQVKSV
PGADTRMALIPKPKTARIGGKDLVDGEILTWARDVLDAIFPPVQAPTEEVSQ
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgaccggtctgctcaccgcgctctccgaggaccgcagcttcgcgaacatccgc
gcgcaggccgcccggccgctcacggaacgctccgccgagacgatcatcagcgcgaccgac
ggcttgcgcgcgccggtgctcgcgcagatcgcgcgggggctcgcggacggggccggggca
gcgtcgtcgtccgacggggccaagggcggttcctcggggtccaccccgatcctgcttgcc
gtgaccgccacgggacgtgaggccgaggaactgcagtcggggctcgagtcctacgtgccc
gccgagcagatcgcgaatttcccgtcctgggagaccctgccgcacgaacgactctcgccg
cgctcggacaccgtgggtcagcgattgagcgtgctgcggcgcctggaccatgtgcaggac
ggggaacagccgctgcgcgtggtcgtggcgccggtgcgttcggtgctgcagcccgtggtc
gccgggctgggtgccatgaaaccggtgacgctgcgcacgggccaggagtacgacttccag
cagctcgtggcacgtcttgccggggcagcgtattcgcgcgtggacatggtgacccgccgt
ggtgagttcgcggtgcgcggtgggatcatcgacgtcttcccgcccaccgaggaccacccg
gtgcgcgcggagttcttcggggacgagctcgacgagatgcggtggttcgcggtcgcggac
cagcgcacgctgaccgatgccgaacacccgtccgtgatcgtggcgccgccgtgccgcgaa
ctgctcatcaccccgtcggtgcagtcgcgcgccgccaagctcaaggaacagctgccgggc
gggcgcgagatcctggagcgtattgctggcgggcagtacgtggagggcatggaatcgctc
gcgccactgctcgcggacgagatggtccagctcatgtccctgctgcccgaaggctccatg
accgtggtgctcgaacccgagaaggtccgggcccgcgcgcacgacctcgtggccaccaac
caggagttcctcacggccgcgtgggagtccgcctcgggcggcaacgacgccccgctggac
ctgcacgccgcgctcgacgccgacgacggcgcgtcccgcacgcccgccgccgggtccttc
cacaccgtgggggaggtccgggaactcgcgctcgaccggtcggtggggtggtggtccgtc
acggggctcaacgtcaacgccgtgacgacctcccagatcgacgccgacaccgcggacgag
gaggtccggctcgcggacaccgacgccgacaccctgaccgtcacggcgcgcgaacccacc
cggttctcgggggacgtggaggccatgctgcgcttcctgggggagcgcatgcacgacgac
tggcgggtcgtgctcgtcacggacggccccggaccgctgcagcggctgagcgagctgctg
cacggggcggagatccccgccgcccggtgcgacagcctcacggaggtgccccgggccggt
ctcgtggaactgaccacggcccgcgccggacgcgggttcgtcatcgagtccacgcgcacc
gccctgctgaccgaggcggacgtgctcgggcgttccaccgcctacgacaaccgggcgcag
cgcaaactgccgcagcggcgcaagcgcaaccaggtggaccccctggccctgcagaagggc
gactacgtggtgcacgagcagcacgggatcgggcagttcatcgaactcgtgcagcgaccg
atcgccggggccatgaccgccccgggtcaacccaagcccgtgcgcgagtacctcgtgctc
gagtacgcgccgtccaagcgcaacggtccccgggaccggttgttcgtgcccacggagcag
ctcgaccaggtgagcacgtacgtgggcggggaagcgccgtcgttgtccaagatgggtggc
gcggactggaacaagaccaagcgcagcgccaagaaggccgtcaaggagatcgccaacgaa
ctgatccggctgtactcggcgcgcatggcgtccaagggctacgcgttcggcccggacacc
ccgtggcagcgcgaactcgaacaggccttcccgtacgtggagaccccggatcagctcacc
acgatcgacgaggtcaaggcggacatggaacggcccatccccatggaccggttgatctcc
ggggacgtgggctacggcaagaccgaggtcgcggtgcgcgcggcgttcaaggccgtgcag
gacggcaaacaggtggccgtgctcgtgcccaccacgttgctcgcccagcagcacaccgag
accttcgccgaacgcttctcgggcttcccggtgcgcctggccacgctgtcccggttccag
agcgccaaggagtccaaggccacgctcgagggactgcgctccggcgcgatcgacgtcgtc
gtcgggacccaccgactgctctccaaggagacccagttcaagaacctgggcctggtgatc
atcgacgaggaacagcgtttcggcgtggagcacaaggagaagctcaaggccatgcgcacg
gacgtggacgtcctggccatgtccgcgacccccatcccgcgcacgctggagatgtccatg
acgggcatccgtgagacctccacgctcgcgaccccgcccgaggaacgccaccccgtgctc
acgtacgcggggccctacacggacaagcaggtctccgcggccatccggcgtgagctcatg
cgcgagggccaggtgtttttcatccacaaccgtgtgtcctcgatcgaggcgcaggccaaa
gcgctcgccgaactcgtccccgaggcgcggatcgcggtggcccacgggcagatgagcgag
tcgcgcctggagcagatcatcgtggacttctgggagaagaagttcgacgtcctggtgtgc
accaccatcgtggaaacgggcctggacatcgccaacgccaacacgctgatcgtggaccat
gcggaccgctacgggctgtcgcagctgcaccagttgcgcggtcgcgtgggccgtgggcgt
gaacgtgcctacgcctatttcctgtaccccacggagaaaccgctcagcgagacggcactg
gaacggctcaaggccgtggccgcccacaacgagctcggctcgggcttgcaattggccatg
aaggacctcgagatccgcggcgcgggcaacctgctgggcggggaacagtccggacacatc
gcgggcgtgggcttcgacatgtacctgcggctcgtgggggaggcggtggccgagtaccgc
ggcgaccaggacacgggtcccgccgagatgaagatcgagctgcccgtcaacgcccacctc
ccgcacgactacgtgcccggtgagcgcttgcggctcgaggcgtaccgcacgatcgcgaac
gccgccacggaagaagccgtcgcggaggccggcgaggaactcaaggaccgttacggcccg
ctacccaccccggtggagaacctgctcgacgtcgcccggttgcggatccgggcgcgcgcc
gcgggtctcacggacgtggccacccagggcaccatgatccggttctcgccggccgagctc
accgagtcccgcgagatgcgcctgactcggatgtacccgggcgcgcaggtgaagtccgtc
ccgggggcggacacccgcatggcgctgatccccaaacccaagaccgcgcggatcgggggc
aaggacctcgtggacggggagatcctcacatgggcacgggacgtgctggacgcgatcttc
cctccggtacaggcacctacggaggaggtctcgcagtag
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