Kineobactrum salinum: G3T16_00805
Help
Entry
G3T16_00805 CDS
T06468
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kim
Kineobactrum salinum
Brite
KEGG Orthology (KO) [BR:
kim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kim03019
]
G3T16_00805 (hrpA)
Enzymes [BR:
kim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G3T16_00805 (hrpA)
Messenger RNA biogenesis [BR:
kim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G3T16_00805 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
NACHT
AAA_11
ResIII
AAA_25
T2SSE
Helicase_RecD
TsaE
SLFN-g3_helicase
ABC_tran
AAA_23
AAA_30
SRP54
PhoH
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
QIB67477
UniProt:
A0A6C0U8R6
LinkDB
All DBs
Position
complement(171819..175586)
Genome browser
AA seq
1255 aa
AA seq
DB search
MQRDVTDNRSIPDIQFPAELPVVQRREDIARAIDQHQVVIIAGETGSGKTTQIPKICLQL
GRGREARIGHTQPRRLAARSVAQRIAQELNTPLGELVGYQVRFNDSVSEASAIKLMTDGI
LLAEIRRDRLLRQYDTLIIDEAHERSLNIDFLLGYLHQLLPQRPDLKLIITSATIDVHSF
SRHFSDAPIIEVSGRSYPVETLYIDPAEDRDLGLQQQIVELVDAIETGQFGARGDVLVFL
SGERDIRELAKQLRHNDRLEVLPLYARLSQAEQSRVFDLSRRRGLRVVLATNVAETSVTV
PGIRFVIDPGEARISRYSFRTKVQRLPIEAISRASANQRQGRCGRLGPGVCIRLYSEADF
LARPEFTDPEILRTSLAAVILQMLQLGLGEVQRFPFINPPDPRMVRDGYKLLEELGAVSA
RGKLTGTGKQMARLPVDPRLARMVLAGRQFGCLDEILVIAAALAIQDPRERPADKQQQAD
QMHARFRHPRSDFMAWLALWQYYEEQRQNLSQSQLRKLCQREFLSFLRLREWRDLHAQLR
IACRQLGLPAGSGPGATAAEELPYEGIHRALLAGLLSNIAQHLEDRDYLGSRNRKLQIFP
GSALGRQRPKWLVAAEIVETSRIFARGVGSIEPAWVLDTNPALLKYHYYEPRWEARKGRA
MAWERVTLYGLVVADRRPVHYGPINPVEARELLIREGLIGARLPRHPAFLKHNQRLLREL
EDMEARVRRRDLLADEQVLFGFYDERLPANLTTAEQLRTWLATEPAADRELRVPRELLLA
RDPGAGLEQQFPDRLRWEDVDYRLSYQFEPGQVGDGVSVTVPVGLLNRVPRFRFDWLVPG
LLRDKCIQLVKSLPKSKRKQLVPVPDYVDRALAALEPDNIDLYAALAAQLTRLGGVSLQA
GDWARDKLDPFYRMNIRVVDANGRLLTQGRDLDALIEAFRSDTRDTIATAAPARSPARQD
ITGWDLGTLPREWRFRQAGVDIVSWPALVDHGESVAIELSDYPGLAWLQHRLGVLRLLQL
QRRQQVKYLRKQLLQGNETSLLLAGAGQQRSQLVDDMIDAAFLQLSGASAVGEASLPYTE
AAFNEALQQCEGVVERAGELEGNLLNALRPLAELQPLLARYADPAWAVPLADVKQQLAAL
WQPGFQRDSPAQWLAQLPRYMKALRLRLERLNGQLERDVGHTEMLQRLSEPLLDACEQRA
GLLLRCEAAQQYRWMLEEFRVSLFAQNLGTRVPVSEKRLREQWERVAAWLRTNPH
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atccagagagacgtgaccgacaaccgttccatacctgatatccaatttcccgcagagctg
ccggtggtgcagcggcgggaggatattgcgcgggcgatagaccagcaccaggtcgtgatc
atcgccggtgagacaggttcgggcaagaccacccagatccccaagatctgcctgcagctg
ggtcgtgggcgtgaggcccgtatcggccatacccagccccgccggttggcggcgcgcagt
gtggcccagcgcattgcccaggagctgaatacgccgctgggcgaattggtgggctatcag
gtgcgcttcaacgacagcgtatcggaggcctcggcaatcaagttgatgaccgatggcatc
ctgctcgcggaaattcgcagggaccggcttctgcgccagtacgacacgctgatcatcgac
gaggcgcacgagcgcagcctcaatatcgacttcctgctgggttatctgcaccagctgtta
ccgcagcggcccgacctgaagctgatcattacctcggccacgattgacgtgcacagcttt
tcccgccatttttccgatgctccgatcattgaggtatcgggccgcagttatccggtggaa
acgctgtatatcgatccggctgaggatcgggatcttggattgcagcaacagatcgtcgag
ctggtggatgcgatagagactggccagttcggggcccgtggcgatgtgttggtgtttctc
tccggcgaacgcgatattcgcgaactggcaaaacagctgcggcacaatgaccgtctcgaa
gtattgcctctgtatgcgcgcctgagccaggcggagcagagccgggttttcgacttgtcg
cggcgccgcgggctgcgggtggtgttggcaaccaatgtggcggaaacctcggtcacggtg
cccggtatccgctttgtgatcgacccgggcgaggcacgcatcagccgctacagtttccgc
accaaggtccagcgcctgcccatcgaggccatttcccgcgccagcgccaatcagcgccag
gggcgctgcggtcgcctgggtccaggagtctgtatccgcttgtactccgaggctgacttt
ctggcgcggcccgaattcaccgatcccgagatactgcgtaccagcctggctgcggtgatc
ctgcagatgttgcagctcggcctgggggaggtgcagcgtttcccgttcatcaatccaccg
gacccgcgcatggtgcgcgacggctacaagctgctggaggagctgggcgcggtcagcgcc
cggggcaagctcaccggcactggcaaacagatggcgcgcctgccggtggacccacggctg
gcgcgcatggtattggcgggccgccagtttggctgtctggacgagattctggtcatcgcc
gccgcgctggcgatccaggatccgcgggagcgaccggccgacaaacaacaacaggcagac
cagatgcatgcccgcttccggcacccgcgctcggatttcatggcctggctggccctgtgg
cagtactacgaggagcagcgccagaatctgagtcagagccagttgcgcaaactctgccag
cgcgaattcctgtcctttctgcggctgcgtgaatggcgcgacctgcatgcccagctgcgt
attgcctgccgtcaactgggcctgccggccggcagcgggcccggagcaacggcagcggag
gagcttccctacgagggcatccaccgggccctgctggccggtctgctgtccaatattgcc
cagcacctggaggaccgggactatctgggcagccgcaatcgcaagctgcagatctttccc
ggttcggccttgggacggcagcgaccgaagtggctggtggccgcggaaatcgtcgaaact
tcgcggatattcgcccggggtgtcggcagtatcgagcccgcctgggtgctggataccaac
cctgcgctgttgaaataccactactacgaaccgcgctgggaggcgcgcaagggtcgggca
atggcctgggaaagggtgaccctgtacggcctggtggtcgccgatcggcgcccggtccac
tacggcccgatcaatcccgtggaggcacgcgaactgctgatccgggagggcctgatcggt
gcgcgcctgccccggcatcccgcctttctcaagcacaaccagcgtttgctgagggagctg
gaggatatggaggcgcgggtgcggcgccgcgatctgctcgcggatgagcaggtcctgttt
ggcttctatgatgagcgcctgccggcgaacctgaccacggcggagcagttgcggacctgg
ctggccaccgagccagccgccgaccgcgagttgcgggtgccgcgggagttgctgctggcg
cgtgatccgggcgccggactggagcagcagtttccggaccggctgcgctgggaggatgtg
gactaccgcctcagctaccagttcgagccgggccaggttggcgacggggtatcggtcacg
gttccggtgggcctgctcaaccgggtaccgcggttccggtttgactggctggtgccgggg
ctgctgcgtgacaagtgtatccagttggtcaagagcctgccgaaaagcaagcgcaaacaa
ctggtgccggtacccgactatgtcgatcgtgccctggccgcgctggaaccggataatatc
gatctttacgccgcgctggctgcacagctgacccgcctgggcggagtgtccctgcaggcg
ggggactgggcacgggacaaattggaccctttttaccggatgaacatccgcgtggtggat
gcgaatggtcgtttgctgacccagggacgcgacctggatgccctgatcgaggcatttcgc
agtgacacccgcgacaccatcgccaccgcggcgccggcccgcagtccggcgcggcaggat
atcactggatgggatctgggcacgctaccgcgggaatggcgttttcgtcaggccggcgtc
gacatcgtgtcctggccggcactggtggatcacggggagtcggtggcaatcgagctcagc
gactatcctggcctggcatggttgcagcaccgtctgggtgtgttgcgcctgctgcagctg
cagcgccggcaacaggtgaagtacctgcgcaagcaactgttacagggaaacgaaaccagc
ctgctgctggccggcgcggggcaacagcggtcccaactggtggacgacatgatcgatgcg
gcctttctgcagctgtcgggtgcgagtgcagtcggggaggcgtcgttgccctataccgag
gcggccttcaatgaagcgttgcagcagtgcgagggcgtggttgaacgcgccggggagctg
gagggcaacctgctcaatgcattgcggccgctggcggagctgcagccgctgctggcgcgc
tacgcggacccggcctgggctgtaccactggcggatgtgaaacagcaactggctgcgttg
tggcagccgggattccagcgcgacagtccggcccaatggctggcccagttaccccgctac
atgaaggcattgcggttgcggctggagcgtctcaacggccagctggagcgggatgtgggg
cacaccgaaatgctgcagcggctgtccgagccactgctggatgcctgtgagcaacgcgcc
gggttgttgctgcgctgcgaggcggcgcagcagtaccgctggatgctggaggagttccgg
gtgtccctgttcgcccagaacctgggtacgcgtgtgccggtttctgaaaaacgcctgcgg
gagcagtgggagcgggttgcggcctggctgcggaccaatccgcattga
DBGET
integrated database retrieval system
