Kineobactrum salinum: G3T16_01315
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Entry
G3T16_01315 CDS
T06468
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kim
Kineobactrum salinum
Pathway
kim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3T16_01315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kim03019
]
G3T16_01315
Enzymes [BR:
kim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3T16_01315
Messenger RNA biogenesis [BR:
kim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3T16_01315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
HI1480
AAA_22
DEDD_Tnp_IS110
CMS1
Motif
Other DBs
NCBI-ProteinID:
QIB64247
UniProt:
A0A6C0TZW1
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All DBs
Position
complement(298886..300169)
Genome browser
AA seq
427 aa
AA seq
DB search
MSFDNLGLSASLLRAIADQGYTTPSPIQAKAIPLILEGRDVMAAAQTGTGKTAAFTLPLL
HRLTDGRAVRPNRCRALVLTPTRELAAQVQGSVRDYGKYDGLTSAVVFGGVKINPQIALM
RRGIDVLVATPGRLLDLHGQGFIDFSDVEVLVFDEADRMLDMGFIHDIRRIVKLLPVKRQ
TLMFSATFSAEITQLAQGYMQNPVKVEVSTPNATADTVTQWVYPVDKKRKPELLSHLVRD
NAWNQVLVFTRTKHGANKLSQLLEKDGIRAVAIHGNKSQNARTKALGDFKSGKIQALVAT
DIAARGLDIEQLPQVVNFDLPNVAEDYVHRIGRTGRAGAAGIAYSLVSADEADYLYGIEK
LIRKSLPREEIDGFEPEHAVPQGRPAQQTRPPARRGGAGAPRGQQPARRRRGGNGGRGNV
SGSRAPR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgacaaccttgggctgtctgccagcctgttgcgcgctattgccgaccagggc
tacaccactccctcacccatccaggccaaggccattccgctgattctggaggggcgtgat
gtgatggctgcggcccagaccggtactggcaagactgccgctttcactttgccgctgctg
caccgtctgaccgacggcagggccgtgcgtcccaatcgctgtcgcgcgctggtgctgacg
ccgacccgggagctggctgcccaggtccagggcagtgtacgcgactatggcaagtacgat
ggcctgacttccgccgttgtatttggcggggtgaaaatcaatccccagatcgccctgatg
cgccgcggcatcgatgtgttggtggcaacgcccgggcgcctgctggatctacatggtcag
ggcttcatcgatttcagcgacgtggaggtactggtcttcgacgaagccgatcgcatgctg
gacatgggcttcatccacgatatccgccgcattgtgaaactgctgccggtgaagcgccag
acgctgatgttctcggcaacgttttccgctgaaatcacgcaactggcccagggctatatg
caaaatccggtgaaggtggaagtcagtacacccaacgctaccgccgacaccgtgactcag
tgggtttaccctgttgacaagaaacgcaagcccgagctgctcagtcatctggtccgcgac
aatgcctggaaccaggtgctggtattcacccgtaccaagcacggtgccaacaaactcagc
cagttgctggaaaaggacggcattcgcgccgtggcgatccatggcaacaagagccagaac
gcccgcaccaaggcgctgggcgacttcaagtcgggcaagatacaggcgctggtggccacg
gatattgccgcgcgcggcctggacatcgaacaattgcctcaggtggtgaatttcgatctg
ccgaacgtggcggaagactatgtacaccgcattggccgtaccgggcgtgccggcgccgcc
ggcatagcgtattccctggtcagcgccgatgaggcggattacctgtacgggatcgaaaaa
ctgatccgcaaaagtctgcctcgcgaggaaatagatggtttcgagcccgagcacgccgtg
ccccaggggcgtccggcccagcagacccggcctccggccagacgcggcggcgctggagcg
ccacgcggccagcaaccggcccgccgccgccgtggcggcaacggtggccgcggcaatgtg
tccggcagtcgcgctccccgttaa
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