Kineobactrum salinum: G3T16_11525
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Entry
G3T16_11525 CDS
T06468
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kim
Kineobactrum salinum
Pathway
kim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kim00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G3T16_11525 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kim03021
]
G3T16_11525 (rpoD)
Transcription machinery [BR:
kim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G3T16_11525 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
MmeI_TRD
TMPIT
AROS
Motif
Other DBs
NCBI-ProteinID:
QIB65956
UniProt:
A0A6C0U1S0
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Position
complement(2639201..2641003)
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AA seq
600 aa
AA seq
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MTNVAQQQSRLKDLIARGKDQGYLTYSEVNDHLPEDISDPDQVEDIIQMINDMGIQVFEV
APDADELLMAEGDGSADDIAAAEAAAALAAVETEAGRTTDPVRMYMREMGTVELLTREGE
IVIAKRIEEGVRELMSALAHYPGAVQQVLHEYDQVTREERRLGDVMIGYLDPADHVPSAA
EIAEASVPDDSDEETESGPDPVEAKKRFTALKRQCAKTEKLIADKGRSDKTTIKEMEKLG
ELFKFFKLTPRVFDPLTDKPRQVLSAVREQERQIMSIAIRDCGMPRKDFITSFQGSESDV
DWVVRQTRGKKEYVAKLAAQKETIMRLQRRIIQVEEQSGLSVNEIKEINRRMSMGEARAR
RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDK
VRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTINSPVDAATGQGLQEATKEVLAGLTA
REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDYLRSFLDE
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatgtcgcccaacaacagtcccgcctcaaggatctcatcgcccggggcaaggac
cagggttacctcacctactccgaggtaaacgaccacctgccagaggatatctcagatccg
gatcaggttgaagacatcatccagatgatcaacgacatgggcattcaggtgtttgaggtc
gcgccggatgccgacgaactgctgatggccgagggagacggttccgccgacgacattgcc
gccgccgaggcagctgccgcgctggccgcggtggagaccgaagcgggccgcaccaccgac
ccggtgcgcatgtacatgcgcgagatgggcaccgtcgaactgctgacccgcgagggcgag
atcgttatcgccaagcggatcgaggagggtgtgcgcgaactgatgtccgcgctggcccac
taccccggcgcagtccagcaggtcctgcacgaatatgaccaggtaacgcgcgaagaacgg
cgcttgggcgacgtgatgatcggctatctggacccggccgaccacgtgccctcggcggcg
gaaatcgccgaggccagcgtacccgacgattccgacgaggaaaccgagtccggccccgac
ccggtggaggcgaaaaagcgcttcaccgccctcaagcgccagtgcgccaaaaccgaaaaa
ctcattgccgacaagggccgcagcgacaagacaaccatcaaggagatggaaaagctgggc
gaactgttcaagttcttcaagcttactccgcgggtattcgatccgttgaccgacaaaccc
cgccaggtgctgtccgccgtgcgcgagcaggagcggcagatcatgtccatcgccattcgc
gattgcggcatgccgcgcaaggatttcatcaccagcttccagggctccgaatccgatgtc
gactgggtcgtgcgccagacccgcggcaagaaggagtatgtcgccaagctcgccgcccag
aaagaaaccatcatgcggctgcagcgccgcatcatccaggtggaagaacagagcggcctt
tccgtcaatgagatcaaggaaatcaaccgccgcatgtccatgggcgaagcccgtgcccgc
cgtgccaagaaagaaatggtcgaggccaacctgcgcctggtgatctccatcgccaagaag
tacaccaaccgcggcctgcagttcctggaccttattcaggagggcaacatcggcctgatg
aaggcggtggacaagttcgagtatcgccgcggctacaagttctctacctatgccacctgg
tggatccggcaggccatcacccgctccatcgcggaccaggcccgcaccatccgcattccg
gtacacatgatcgagaccatcaacaagctcaaccggatctcccggcagatgctgcaggag
atggggcgcgaacccaccccggaagagctgggcgagcgcatggaaatgccggaagacaag
gtgcgcaaggtactgaagatcgccaaggaacccatttcgatggagacccccatcggcgac
gatgaagactcgcacctgggcgatttcatcgaggacagcaccatcaactcaccggtggat
gcagccaccgggcagggcctgcaggaggccaccaaggaggtcctggccggcctgaccgcc
cgcgaggcgaaagtactgcgcatgcgctttggcatcgacatgaacaccgaccatacgctg
gaagaagtgggcaagcagtttgacgtcacccgcgagcgcattcgccagatagaggccaag
gccctgcgcaagctgcgtcacccgacccgctcggactacctgcgcagcttcctggacgag
taa
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